DreEX6017812 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36325042-36326174:-
Coord C1 exon
chr3:36326077-36326174
Coord A exon
chr3:36325829-36325992
Coord C2 exon
chr3:36325042-36325220
Length
164 bp
Sequences
Splice sites
3' ss Seq
AAATTTGCTTCTTCCTCCAGGCG
3' ss Score
9.46
5' ss Seq
AGGGTACAG
5' ss Score
3.14
Exon sequences
Seq C1 exon
TCTGATAAACCAACATAAAAGCATCAAACAGAAAGTCGCCAGCAGCAAAACTGCACTACAGGCCCGACTGGCAGAGCTCAAGAAGGAGAGTACAGGAG
Seq A exon
GCGCAGATAAGCAAGAGCAGCAGTGCCGTCAGCTGATGGCAGGACTGGATAAAGTTGTCAGCGATCTGGATAAGCAGGAGAAGGCCATTTACTCTCGTGTGCGCCCTCCACTGGAGCAGACGCGTCCTGTGCAAGACAGCGCTGATAGGCTGCAGGACATCAGG
Seq C2 exon
GACATTACTTCTGCTGTCAATAAGATAGAGCCAGAAAAGTCTGCAAAAGTAAAGGAGGCTGAGGCTTTCCTTAAATCCTCCCCGAAATGCGCAAGTGCCCCACAGCTCTACTCCAAGGTGGATGATACTAACAAGAAATACAACAAAGTTGATTTGCTGCTGAAATGTTCAACTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'18-19,'18-17,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.636 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTCGCCAGCAGCAAAAC
R:
GTCAGTTGAACATTTCAGCAGCA
Band lengths:
245-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]