GgaEX6013099 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14028103-14029850:-
Coord C1 exon
chr14:14029753-14029850
Coord A exon
chr14:14029033-14029190
Coord C2 exon
chr14:14028103-14028281
Length
158 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTTCTCTTTCCCCAGATG
3' ss Score
11.86
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GATTGCTGATAGCTACGTGGCTGTGAAGGAGAAGACCTCCAACTGCAAGAACGTCCTCCAGCAGCGCTACGAGGGGCTGAAGGCTGACAGCATTGGAG
Seq A exon
ATGCTGCATCAGTTCAGGGCCGCCAGCTTCTGGCAGGGCTGGAGAAAGTGCACAGTGACCTGGACAAGTTGGAGAAAGCAATAACAGCAAACCTCCGTCCGCCACTGGAGCAGAGCCGGGCTGTGCAGGACAGCACCGAGCGCTCCAAGGACCTGAAG
Seq C2 exon
AACATAACCAATGAAGTGCGTCGCATCGAACCAGAGAAAGTGAGGAAGATCCAGGACTGCGAGGCCTTCATTGAGTCCGTGCCCAACACTGGCAGTGCCACACTGGTGAAGAACAAGGTGGAGAACACCAACAAGAAGTACGACCGCGTGGTTCAGCTGCTCAGTGCTGCCCAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.396 C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGATAGCTACGTGGCTG
R:
GCGGTCGTACTTCTTGTTGGT
Band lengths:
243-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]