BtaEX6108386 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3972511-3975057:-
Coord C1 exon
chr25:3974919-3975057
Coord A exon
chr25:3973992-3974185
Coord C2 exon
chr25:3972511-3972661
Length
194 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCTCCACCCCGCAGGCC
3' ss Score
11.55
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GCTCGACATCGCCAACCGCCTGGAGAAGAGCCTGCAGCAGGGCCGGGAGATGCTGGCCACGTATGAGACCCAGCTGGCCCAGGAGGACACGGTGCCCGAGAGTGGCCAGGCCCTGGACAGCAGGAGGCAGGAGCTGGCG
Seq A exon
GCCATGGCCTCCGAGCTGCAGGCCCGGAAGGCCCTCCTCGGCGAGGTGCAGCGGAACCTGCAGGCCGCCAAGCAGTGCTCGGGCTCGCTGGCCAGCCGCTTCCAGGAGCACTGCCCGGACCTGGAGCGCCAGGAGGCCGAGGTGCACAAGCTGTGCCAGCGCTTCGACGGCCTCTGCCAGCAGGCGGAGCTCAG
Seq C2 exon
GGTCCAGAGCCTGCAGAGCGCCCGGGCTGAGCACGACGCCTTCTGCAGCGGCCGTGACCGCCTGCTTCAGTTCCTGTCCCACATCCCCAGCTACGAGCCCCAGGAGACGGACGGCCTCGGCCAAGTGGAGACCAAGCTGAACAACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=0.015 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTGGCCACGTATGAG
R:
TCTGGTTGTTCAGCTTGGTCT
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]