DreEX6017814 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36322470-36324820:-
Coord C1 exon
chr3:36324682-36324820
Coord A exon
chr3:36324394-36324587
Coord C2 exon
chr3:36322470-36322620
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGCTCTTGTCTCTAGGAC
3' ss Score
11.99
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTGCAGAACTCCTATCAGCTGGAGAACTCACTGCAGAATGGCAAAACTCTGCTGTCCACTTATGAAAACAAACTGGCAAGAGAAGAGACTGCCCCATCTGACCCCGCTTCAATAGAGAAGACCCAGCGCGAGTTGGCG
Seq A exon
GACATCGCGTCTGAGCTGAGAAGCAAAAGATCTATCATCACACAGACTGAGCAGAACCTGAGAGACGCTAAAACCAGCTGCAGTAACATGACCAATAAAGTGCAAGAGCACTGTCCTGATATCGAGAGGCAAGAGGCGGAGGTTCAGAAAATGACCAAACGCTTTGACAACCTGAACCGACAGACAGAAGCAAG
Seq C2 exon
ATCACAGCATCTGCAAAGAGCTAAAACAGCCTACTCCAACTACCACAATGACTATGAAAACCTCAATAGCTGGCTTTCCCGGATACCAAACTATGAGCCACGTGAAACTGATGACGTTAGACAGATTGACTCAAAACTGAAAAATCAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'22-22,'22-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=0.877 C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAACTCCTATCAGCTGGA
R:
CGTCATCAGTTTCACGTGGCT
Band lengths:
253-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]