GgaEX6013101 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14026566-14027951:-
Coord C1 exon
chr14:14027813-14027951
Coord A exon
chr14:14027327-14027520
Coord C2 exon
chr14:14026566-14026716
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCCCTTTTTCCACAGGCC
3' ss Score
13.07
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGTTGAGGTGGCCACGCACCTTGAGAAGAGCCTCCAGCAAGGCCGAGATCTGCTGTCCTCATATGAGAACAAACTGGTCACAGACGACACCGTGCCGGAGGACTTGCGGGTGATAGACCGTAAGAAAGAAGAGCTGCTG
Seq A exon
GCCATGGGCTCTGAGCTCCAATCCAAAAGGTTCTTGCTCAATGAGGCGGAGCAGAACTTGCTGAGGACCAAGACCTGCTCCAACACCCTGGCCAGCAAGTTCCAGGAGCACTGCCCTGACATTGAGCGGCAGGAAGCCGAGCTCTACAAGCTCAACCAGCGCTTCAACAACCTCAGCAAGCAAATTGACCACAG
Seq C2 exon
AACACAGACCCTGCAGAAAGCAAAGAGTGCCTATTCCAACTACCGCACAAACTATGACAAAATCAACCAGTTCCTTTGCAACATACCCAACTACGAGCCGCAGGAGACAGACAACATCCAGCAGGTGGAAGTGAAGCTGAAGAACCAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.031 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTGAGAAGAGCCTCCAG
R:
GGATGTTGTCTGTCTCCTGCG
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]