BtaEX6109009 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19164658-19168348:-
Coord C1 exon
chr25:19168183-19168348
Coord A exon
chr25:19165662-19165851
Coord C2 exon
chr25:19164658-19164853
Length
190 bp
Sequences
Splice sites
3' ss Seq
TGGTGGTTTGTTTATGGAAGAGA
3' ss Score
0.14
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GATGAAGTCAGCTTCAACCTCCTTACCTATGAAGAAGGAGGTTGTGACATCTTTGACTTTCCCAGGAAGCAGACCAATGAGTCCAGAAGAACAGATTGATGTGATGTTACAGCAGGAGAGGGAAATAGAAAGTAAAGAAACCAAACCATCTGAATCAGACTTGGAG
Seq A exon
AGATACTACTACTATTTGACCAGTGGAATCCGAAAAGACATGATTGCTCCTGAGGAGGACAAAGTGATGGTTCGGATTTCAAAGCTGATTTCAAACACACTGCTGACAAGTCCCTTCCTGGAACCCCTGATGGCTGCCCTTGTGGAGGAGAAGGAAACTGACTATTACAGCAGCCTCATGAAAAGCATTG
Seq C2 exon
TTGATTACATCCTCATGGACCCCATGGAGAGGAAAAGACTCTTCATTCAGAGCACCCCCCGAGCGTTTCCTCAGAGAGTGATCCGGGCCCCTGTGCCCTGGCATAGTGTCTACAGGAATGCCAAGAAGTGGAATGAGGAGCACCTGCACACAGTGAACCCCATGATGCTCAGCCTGAAGCAGCTGTGGTTTTCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGGAAGCAGACCAATGA
R:
GTGTGCAGGTGCTCCTCATTC
Band lengths:
258-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]