GgaEX0002947 @ galGal3
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15753806-15756595:-
Coord C1 exon
chr14:15756415-15756595
Coord A exon
chr14:15755375-15755564
Coord C2 exon
chr14:15753806-15754001
Length
190 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATGTTGTTTTGTAGCGG
3' ss Score
8.29
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
AAGTACCCCGGTGTTACGCGGTCTCCTTTCTCTGCATGCGGCTGCTGGTAGGCCAGAATTAGATGCTATGCATTACACAGAAGACCAACCACTGACTCCAGAAGAGCAGTTTGTTGTCATGCACTCACACCAGGAGGAGATGAATAAGCGAGAAAAGTCACCTTCAGGAAATGATAGAGAG
Seq A exon
CGGTATTGGCACTATGTGCACAGTGCAGTGCAGGAGGACATGTTGGCACCTCAAGATGAGGAAGTGATGAATGCAATTTTAAAGCAAATTCCAACTCGTATTCTTGCTAACCGCTATCTGGAGAATTCACTTGTGAGATTAAAAGGCGAGATTAAGGAAGACTATTTTATCAGCCTCATGAAAGCCATTG
Seq C2 exon
TTGATTACATCTTGATGGATCCAGCTGAGAGAGAGAGACTTCTGATTGGAAGTACCCCACGCCCTTTTCTCCTGAGAGTCATCCGGGCACCCGTCCCATGGCACAGCTCTTACAAAGAAGCAAAAAGCTGGAATGAAAGCAATCTGTTCATTGTCAATCCACTGATGCACACTTTACATCAGCTTTGGCTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_CASSETTE6
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTACGCGGTCTCCTTTC
R:
ACTCTCAGGAGAAAAGGGCGT
Band lengths:
251-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]