RnoEX6004626 @ rn6
Exon Skipping
Gene
ENSRNOG00000050426 | AABR07005597.1
Description
NA
Coordinates
chr1:189850775-189853844:-
Coord C1 exon
chr1:189853670-189853844
Coord A exon
chr1:189852801-189852990
Coord C2 exon
chr1:189850775-189850970
Length
190 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTATTTCTGGAAGAGA
3' ss Score
2.89
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GACACCGCTTGCCTGCAAACACTCATCCTCTTCGAACATGAAGAACGCCACGGACTCCAGCTTGACCTACCCAGAAAGCAGACCCATGAGTCCAGAACAACAGATGGATGTGATGTTGCAACAGGAGATGGAAGTGGAAAGTAAAGAGAACAAACCGTCTGAATTAGACCTGGAG
Seq A exon
AGATATTACTACTATTTGACCAATGGTATCCGAAAAGACATGATTGCCCCAGAGGATGAGGACGTGATGGTGCGAATTTACAAGCTGATCCCTAAGACGCTGCTGACAACTCCAGCCCTCGAACCCCTTCAAGTCTCCCTTAGGTCTGAGAAGGAAAGTGACTATTACTATAGCCTCATGAAAAGCATCG
Seq C2 exon
TTGACTACATCCTCATGGACCCATTGGAGAAGAAAAGGCTGTTCATCAAGAGCATCCCTCGCTTGTTTCCTCACAGAGTGATCCGGGCCCCTGTGCCCTGGCACAACATCTACCAGAGTGTCAAGAAGTGGAATGAGGAGCATTTGCACACAGTGAATCCCATGATGTACACCCTCAAAGAACTGTGGTTTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050426-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGCAAACACTCATCCTC
R:
CTGTGAGGAAACAAGCGAGGG
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]