GgaEX0002947 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15036372-15039161:-
Coord C1 exon
chr14:15038981-15039161
Coord A exon
chr14:15037941-15038130
Coord C2 exon
chr14:15036372-15036567
Length
190 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATGTTGTTTTGTAGCGG
3' ss Score
8.29
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
AAGTACCCCGGTGTTACGCGGTCTCCTTTCTCTGCATGCGGCTGCTGGTAGGCCAGAATTAGATGCTATGCATTACACAGAAGACCAACCACTGACTCCAGAAGAGCAGTTTGTTGTCATGCACTCACACCAGGAGGAGATGAATAAGCGAGAAAAGTCACCTTCAGGAAATGATAGAGAG
Seq A exon
CGGTATTGGCACTATGTGCACAGTGCAGTGCAGGAGGACATGTTGGCACCTCAAGATGAGGAAGTGATGAATGCAATTTTAAAGCAAATTCCAACTCGTATTCTTGCTAACCGCTATCTGGAGAATTCACTTGTGAGTTTAAAAGGCGAGATTAAGGAAGACTATTTTATCAGCCTCATGAAAGCCATTG
Seq C2 exon
TTGATTACATCTTGATGGATCCAGCTGAGAGAGAGAGACTTCTGATTGGAAGTACCCCACGCCCTTTTCTCCTGAGAGTCATCCGGGCACCCGTCCCATGGCACAGCTCTTACAAAGAAGCAAAAAGCTGGAATGAAAGCAATCTGTTCATTGTCAATCCACTGATGCACACTTTACATCAGCTTTGGCTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTACGCGGTCTCCTTTC
R:
ACTCTCAGGAGAAAAGGGCGT
Band lengths:
251-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]