MmuEX6013627 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127226615-127229864:-
Coord C1 exon
chr7:127229690-127229864
Coord A exon
chr7:127228613-127228802
Coord C2 exon
chr7:127226615-127226810
Length
190 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTCATTTCTGGAAGAGA
3' ss Score
3.03
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATGCCGTTTGTATGCAAATTCTCATCCTCCTTGAGCATAAAGAACACCACCGACTCCAGTGTGACCCACCCAGAAAGCAGACCCATGAGTCCAGAACAACAGATGGATGTGATGTTGCAGCAGGAGATGGAAATAGAAAGTAAAGAGCAGAAGCCATCTGAGTTAGACCTGGAG
Seq A exon
AGATATTACTACTATTTGACCAATGGTATCAGAAAAGACATGATTGCCCCGGAGAACGAGGAGGTGATGATGCGAATTTACAAACTGATTCCTAAGACGCTACTGACAACTCCAGCCCTTGAACCCCTTCAAGTCTCACTTAGGTCTGAGAAGGAAAGTGACTATTACTATAGCCTCATGAAAAGCATTG
Seq C2 exon
TTGACTACATCCTCATGGACCCAATGGAAAAGAAAAGGCTGTTCATCAAGAGCATCCCTCGATTGTTTCCTCACAGAGTGATCCGGGCCCCTGTGCCCTGGCACAACATCTACCAGAGTACCAAGAAGTGGAATGAGGAGCATTTGCACACAGTGAATCCCATGATGTACAAACTCAAAGAACTGTGGTTTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACACCACCGACTCCAGT
R:
CTGGTAGATGTTGTGCCAGGG
Band lengths:
251-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: