BtaEX6109057 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18845239-18849272:-
Coord C1 exon
chr25:18849130-18849272
Coord A exon
chr25:18846381-18846585
Coord C2 exon
chr25:18845239-18845376
Length
205 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCTTTGTTCTTGCAGATT
3' ss Score
12.85
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAAGTGGTTGAGGATCTGGCCCAGGACATACTCTCCAAGCTTCCCAATGAATTTGACTTGGAGTTGGTCATGAAGTTGTACCCTGTGGTCTATGAAGAATCCATGAACACTGTCTTAAGGCAAGAGCTCATCAGATTCAACAG
Seq A exon
ATTGACAGAAGTGGTTCACAGAAGCCTCATCGATCTTGGCCGAGCAATTAAAGGGCAGGTTCTGATGTCCTCAGAGCTGGAGGATGTCTTCAGTAGCATGCTTGTGGGTAAAGTGCCAGCCATGTGGATGGCAAAGTCCTACCCATCACTGAAGCCCCTGGGAGGCTATGTGGCTGACCTGCTAGCCCGCCTGGCCTTCTTCCAG
Seq C2 exon
GAATGGATTGACAATGGACCTCCTGTGGTCTTTTGGATCTCTGGATTCTACTTTACACAGTCTTTTTTGACAGGTGTCTCTCAGAATTATGCTCGGAAATACACCATCCCCATTGACCACATTGGATTTGAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'60-62,'60-61,61-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.6=100)
A:
PF0302810=Dynein_heavy=FE(9.6=100)
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGTTGAGGATCTGGCC
R:
ACTCAAATCCAATGTGGTCAATGG
Band lengths:
276-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]