DreEX6096480 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39616336-39620585:+
Coord C1 exon
chr24:39616336-39616478
Coord A exon
chr24:39619389-39619593
Coord C2 exon
chr24:39620448-39620585
Length
205 bp
Sequences
Splice sites
3' ss Seq
CATTTGATATATATTTACAGGCT
3' ss Score
6.16
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAAGTCGTGGATGAGCTAGCAGAGGGAATGCTGGCCAAACTCCCCTGTGATTTTGACATAGAGATGGTGACCAATAAGTATCCTCTTTTATATGAGGAGTCGATGAACACCGTCCTACGGCAGGAGCTCATTCGCTTCAACAG
Seq A exon
GCTGTCCAAAGTGGTGCGTAGCAGCTTGCTAAACACCCAGAAGGCACTTCGGGGACAGGTTGTGATGTCATCTGAGCTGGAAAACGTCTTCAACAGTCTTCTTGTTGGTAAAGTGCCAGCCATGTGGGCTGCAAAGTCCTACCCTTCCCTCAAACCCCTCGGCAGCTACGTGTCCGACTTCCTGGCCAGACTGCAGTTTCTACAG
Seq C2 exon
GACTGGATTGATAACGGCCCTCCGTCAGTGTTCTGGGTGTCAGCATTTTATTTCACTCAGTCGTTCCTTACTGGTGTGTCGCAGAATTTCGCTCGCAAATACACCATTCCCATTGACTACATCGGCTTCGAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'54-55,'54-54,55-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.6=100)
A:
PF0302810=Dynein_heavy=FE(9.6=100)
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGTGGATGAGCTAGCAGA
R:
CAAACTCGAAGCCGATGTAGTCA
Band lengths:
277-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]