RnoEX0001346 @ rn6
Exon Skipping
Gene
ENSRNOG00000054843 | AABR07005593.1
Description
NA
Coordinates
chr1:189691657-189695630:-
Coord C1 exon
chr1:189695488-189695630
Coord A exon
chr1:189693267-189693471
Coord C2 exon
chr1:189691657-189691794
Length
205 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTTTATCCTTACAGGCT
3' ss Score
10.07
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAAGTGGTTGAGGAGCTGGCCCAGGATATACTCTCCAAGCTTCCCAAAGACTTTAACCTGGAAGAGGTCATGAAGTTGTACCCTGTGGTCTATGAGGAGTCTATGAATACCGTCCTAAGGCAGGAGCTCATCAGATTCAACAG
Seq A exon
GCTGACCAAAGTGGTTCGCAGAAGCCTTATTGATCTTGGCCGAGCCATCAAAGGGCAAGTCCTAATGTCCTCAGAGCTGGAGGAAGTCTTCAATAGTATGATCGTGGGTAAAGTGCCAGCCATGTGGGCAGCCAAGTCCTACCCATCACTGAAGCCCCTGGGGGGCTACGTGGCTGACCTATTGGCCCGCCTGGCCTTCTTCCAG
Seq C2 exon
GAATGGATCAACAAAGGCCCCCCTGTGGTCTTTTGGATCTCTGGATTCTACTTCACACAGTCCTTTTTGACGGGAGTTTCTCAGAATTATGCCAGGAAATATACCATCCCCATTGACCACATTGGATTTGAATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054843-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGTTGAGGAGCTGGC
R:
ATTCAAATCCAATGTGGTCAATGGG
Band lengths:
276-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]