GgaEX0002957 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14983833-14985927:-
Coord C1 exon
chr14:14985785-14985927
Coord A exon
chr14:14985017-14985221
Coord C2 exon
chr14:14983833-14983970
Length
205 bp
Sequences
Splice sites
3' ss Seq
GATTTCTGTTTTATCTGAAGGCT
3' ss Score
7.02
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AAAACTGTTGCAGATTTGGCACAGGACATCCTATCCAAATTACCACGTGACTTTGACGTTGAGGAGGTGATGAAGATGTACCCGGTGCTTTATGAAGAGTCCATGAATACAGTCCTGAGGCAGGAGCTGATTCGATTCAACAG
Seq A exon
GCTTACTCAGGTGGTTCGAAGCAGCCTTGTTAATATTGGCAAAGCCATCAAGGGCCAAGTGTTGATGTCGGCTGAACTTGAAGATGTTTTCAACAGCATGTTAATGGGAAAAGTGCCATCAATGTGGGCTGTCAAGTCCTATCCGTCCCTGAAGCCCCTGGGGAGCTACGTGTCCGATCTGCTTTGTCGTTTGGGCTTCTTCCAG
Seq C2 exon
GATTGGGTCATCAATGGGCCACCCACTGTCTTTTGGCTGTCAGGATTCTACTTCACTCAGTCTTTTTTGACAGGTGTTTTACAAAACTATGCCAGAAAATACACCATCCCCATTGACCGCATCGGATTTGAATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.6=100)
A:
PF0302810=Dynein_heavy=FE(9.6=100)
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGTTGCAGATTTGGCACA
R:
CCGATGCGGTCAATGGGGAT
Band lengths:
268-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]