BtaEX6109123 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MHK9]
Coordinates
chr25:19359220-19372327:+
Coord C1 exon
chr25:19359220-19359347
Coord A exon
chr25:19362973-19363093
Coord C2 exon
chr25:19372068-19372327
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCTATTATTGTTCATTCTAGGTA
3' ss Score
9.65
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
TTCGAGGCTTTCCTTCAGAAGAAGATTTTGAAAAGTATATTAAATATGAAAATCAGTCTGTTCTTGTGCTGGCTGCTATAATATTTGATCATGAATTCAAAAACAGTAATGACAGATTGCCACTTAAG
Seq A exon
GTAAAATATCGTCTGCGTTTCCATTCTATAAAAAACACTCCGTGGTTTACAGAACTTCTCTTTCCAGTAAATCCCTCTCGAGGACCCAGGAACCCGAGTTCCACAGAAGGGGGAAGTCCTG
Seq C2 exon
ATTACTACAAAGGTGGATTCCTGCTTGTGCAGCATGCCTTAGATAAGGCCATCATTGTGTACCATAATGGCAGAGCTGCGGAAATGCTATTTGCAAATGTCAACATTTTTGTTAGCAGATTTCCATACCCTACTTATTATAAAGATAATTTTTTTCTCTCTTTTTTATCTCTCTTCCCTTTAGCAGTTTTACTTATATTTTCTCTAACTGAACTTACTCTTATCAGGACCATTGTTATGGAAAAGGAAACCAGATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006717-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.244 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.7=100)
A:
PF126982=ABC2_membrane_3=FE(15.0=100)
C2:
PF126982=ABC2_membrane_3=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCTTGTGCTGGCTGCTA
R:
ACTGCTAAAGGGAAGAGAGATAAA
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]