MmuEX0002951 @ mm10
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120211510-120216388:+
Coord C1 exon
chr7:120211510-120211637
Coord A exon
chr7:120212636-120212795
Coord C2 exon
chr7:120216129-120216388
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCTTTGACTTGTTGTTCTAGGTA
3' ss Score
10.81
5' ss Seq
CTGGTTAGC
5' ss Score
2.22
Exon sequences
Seq C1 exon
TTCAAGGCTTTCCTTCGGAAGAATCTTTTGAGAGATACATTAAGTATGAGAACAAGGATGCGCATGTGCTGGCTGCTATTGTGTTTGATCACAAGTTCAAAACCAGCAATGAACGCTTGCCACTTCAG
Seq A exon
GTAAAATATAGTTTGCGCTTCGGTCGTATCTATGATCCTGAAAATTTGTTTCAGCCGTCTAAGTATCAGAAAGAAATAGAGTGGAATACATCAACTCTCTTCCCATCCGTGCCTTCTCTAGGACCCCGGAACTTCTTGGAAAACGATGGGGGAAACCCTG
Seq C2 exon
GATACATCAGAGAAGGATTTCTTATCGTGCAGCATTCAGTAGACAAGGCCATCATGATGTATCACAGTGGCAGAGCAGCTGAAGACATATTTGCCAACACCACAATTTATGCGGAGAGATTCCCACACCCGGCCTTTATTCATGACAGCTTCTTGTGGACTTTTATTGCTATGTTTCCTTGGACAATTTTATTTACATTTACTCAAATGGCACTTGTCATAGTTGGGACCATTATGCTGGAAAAGGAAAAGAGATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.5=100)
A:
PF126982=ABC2_membrane_3=FE(12.0=100)
C2:
PF126982=ABC2_membrane_3=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGAACGCTTGCCACTTC
R:
GGTCCCAACTATGACAAGTGCC
Band lengths:
253-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types