Special

MmuEX0002951 @ mm9

Exon Skipping

Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:127355024-127359902:+
Coord C1 exon
chr7:127355024-127355151
Coord A exon
chr7:127356150-127356309
Coord C2 exon
chr7:127359643-127359902
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCTTTGACTTGTTGTTCTAGGTA
3' ss Score
10.81
5' ss Seq
CTGGTTAGC
5' ss Score
2.22
Exon sequences
Seq C1 exon
TTCAAGGCTTTCCTTCGGAAGAATCTTTTGAGAGATACATTAAGTATGAGAACAAGGATGCGCATGTGCTGGCTGCTATTGTGTTTGATCACAAGTTCAAAACCAGCAATGAACGCTTGCCACTTCAG
Seq A exon
GTAAAATATAGTTTGCGCTTCGGTCGTATCTATGATCCTGAAAATTTGTTTCAGCCGTCTAAGTATCAGAAAGAAATAGAGTGGAATACATCAACTCTCTTCCCATCCGTGCCTTCTCTAGGACCCCGGAACTTCTTGGAAAACGATGGGGGAAACCCTG
Seq C2 exon
GATACATCAGAGAAGGATTTCTTATCGTGCAGCATTCAGTAGACAAGGCCATCATGATGTATCACAGTGGCAGAGCAGCTGAAGACATATTTGCCAACACCACAATTTATGCGGAGAGATTCCCACACCCGGCCTTTATTCATGACAGCTTCTTGTGGACTTTTATTGCTATGTTTCCTTGGACAATTTTATTTACATTTACTCAAATGGCACTTGTCATAGTTGGGACCATTATGCTGGAAAAGGAAAAGAGATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF126982=ABC2_membrane_3=FE(15.4=100)

							
A:
PF126982=ABC2_membrane_3=FE(12.0=100)

							
C2:
PF126982=ABC2_membrane_3=FE(19.5=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000081690f5224A





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000081690
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr16:2416963-2417125 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:19362973-19363093 
BtaEX6109123
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCAATGAACGCTTGCCACTTC

				
R: 
GGTCCCAACTATGACAAGTGCC

				
Band lengths: 
253-413

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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