BtaEX6109823 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040555 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr25:27325280-27326332:+
Coord C1 exon
chr25:27325280-27325366
Coord A exon
chr25:27325454-27325672
Coord C2 exon
chr25:27326171-27326332
Length
219 bp
Sequences
Splice sites
3' ss Seq
CCCAGCTTCCATCTCCCCAGGAT
3' ss Score
8.53
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGGGAAGGCTGAGGGTGTCATCAATGCAGAGATCCCCAACTGCTGGGAGTGCCCTCGCTGCACCCAGGAAGGCCGGACCAGCAAG
Seq A exon
GATTCAGGTGAGGGACCAGGCCGCCGCAGGGCTGACAACGGCGAGGAGGGCGCCAGCCTGGGGAGTGGATGGAAGCTGACGGAAGAGCCGCCACTTCCACCACCTCCACCCAGGCGCAAAGGTCCCTTACCTGCTGGGCCCCCCTCAGAGGACGTGCCTGGGCCCCCCAAAAGAAAGGAGAGGGAGGCAGGGAATGAGCCCCCTACCCCAAGGAAAAAG
Seq C2 exon
GTGAAAGGAGGCCGAGAGAGGCACCTGAAGAAGGTGGGTGGAGACGCCTGCCTCCTCCGAGGATCGGACCCAGGCGGCCCCGGCCTTCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCTTTCTCGTCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040555-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(12.3=24.1),PF0062824=PHD=PD(35.4=79.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCTGAGGGTGTCATCA
R:
CTCCCAGTTCTCGGGAGGG
Band lengths:
245-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]