RnoEX0035233 @ rn6
Exon Skipping
Gene
ENSRNOG00000018986 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:RGD Symbol;Acc:1310989]
Coordinates
chr1:199198877-199199786:+
Coord C1 exon
chr1:199198877-199198963
Coord A exon
chr1:199199043-199199261
Coord C2 exon
chr1:199199754-199199786
Length
219 bp
Sequences
Splice sites
3' ss Seq
CCCCAGCTTACACTTTCCAGGAT
3' ss Score
4.84
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGGAAAGGCTGAGGGTGTTATCAATTCAGAGATACCCAACTGTTGGGAGTGCCCCCGATGTACCCAGGAAGGACGGACAAGCAAG
Seq A exon
GATGCAGGTGAGGGTCCAGGGCGCCGCAGGGCTGACAATGGTGAGGAAGGCGCTAACCTAGGGGGTGGATGGAAGCTGACAGAGGAGCCGCCACCTCCACCACCCCTGCCCAGAAGAAAGGGACCCTTACCTGCTGGCCCTCCCCCTGACGATGTGCCTGGGCCCCCCAAACGGAAGGAGAGGGAGGGGGGGAATGAGCCCCCCACCCCAAGGAAAAAG
Seq C2 exon
GTGAAAGGAGGCCGAGAGAGGCACTTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018986_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(12.3=24.1),PF0062824=PHD=PD(35.4=79.3),PF0030115=Rubredoxin=PD(60.0=93.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]