RnoINT0059731 @ rn6
Intron Retention
Gene
ENSRNOG00000018986 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:RGD Symbol;Acc:1310989]
Coordinates
chr1:199198877-199199786:+
Coord C1 exon
chr1:199198877-199198963
Coord A exon
chr1:199198964-199199753
Coord C2 exon
chr1:199199754-199199786
Length
790 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TGTATCTCTTGCCCTGGTAGGTG
3' ss Score
9.8
Exon sequences
Seq C1 exon
ATGGGAAAGGCTGAGGGTGTTATCAATTCAGAGATACCCAACTGTTGGGAGTGCCCCCGATGTACCCAGGAAGGACGGACAAGCAAG
Seq A exon
GTAAAGCAGCTGCTAAGATAGGGGCAGGGTGGAAGAGCCGGAACTAGGTGGGGCCTCATCCCCAGCTTACACTTTCCAGGATGCAGGTGAGGGTCCAGGGCGCCGCAGGGCTGACAATGGTGAGGAAGGCGCTAACCTAGGGGGTGGATGGAAGCTGACAGAGGAGCCGCCACCTCCACCACCCCTGCCCAGAAGAAAGGGACCCTTACCTGCTGGCCCTCCCCCTGACGATGTGCCTGGGCCCCCCAAACGGAAGGAGAGGGAGGGGGGGAATGAGCCCCCCACCCCAAGGAAAAAGGTGAGCAGAAGGGGAAGGCTGGTTTAGAACATGTGATTCTGGGAGCTGAAGTTTGGTGGGTGGATTGGTTTTAGAGCCAGGTCCTACCCCGATCTGGAGAATGAGACCATGTGGATTCGCCCAGAGGTATTTGTGAGTTGTAGCCAGAGCTGTTGATGGAACATGCTCACTATGAAGAAGAAACACAAGCGAGGGGTAACTGGTACAGGCCAGGAATCTTTGAGACCTGGAGGATTAGGGAGGAGCAACAGAGCATGCTCAAACTACTACAGAGGCGGAGGGAAGGGCTCAGAACAAGCCTGAGGGGGAAGAAGGGAGTTGAGGAGCATGCTCAGTAAGACAAGACACTGATTACAAGGTTAGCTTGCTGAGCAGTCTTCCTAGGATGCGGGCTTCTGGGATTTGTAGTCCAAGAAGAGGACGGGAACCTTAGTTTGGTCGCCAGGGCCTCTAATGGGGTCTCTTTCTTCCCTGTATCTCTTGCCCTGGTAG
Seq C2 exon
GTGAAAGGAGGCCGAGAGAGGCACTTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018986:ENSRNOT00000065187:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(12.3=24.1),PF0062824=PHD=PD(35.4=79.3),PF0030115=Rubredoxin=PD(60.0=93.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]