MmuINT0063072 @ mm9
Intron Retention
Gene
ENSMUSG00000030811 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:MGI Symbol;Acc:MGI:3039600]
Coordinates
chr7:134893495-134893880:+
Coord C1 exon
chr7:134893495-134893581
Coord A exon
chr7:134893582-134893661
Coord C2 exon
chr7:134893662-134893880
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CCCCAGCTTACACTTTCCAGGAT
3' ss Score
4.84
Exon sequences
Seq C1 exon
ATGGGAAAGGCTGAGGGTGTTATCAATTCCGAGATACCCAACTGCTGGGAGTGCCCCCGATGTACCCAGGAAGGACGGACAAGCAAG
Seq A exon
GTAAAGCAGGGGCTAAGATAGGGACAGGGTGGAAGATCCGGAACTAGCTGGGGGCCTCATCCCCAGCTTACACTTTCCAG
Seq C2 exon
GATGCAGGTGAGGGTCCAGGGCGCCGCAGGGCTGACAATGGTGAGGAAGGCGCTAACCTAGGGGGTGGATGGAAGCTGACAGAGGAACCACCACCTCCACCACCCCTGCCCAGAAGAAAGGGACCCTTACCTGCTGGCCCTACCCCTGACGATGTGCCTGGGCCCCCCAAACGGAAGGAGAGGGAGGGGGGGAATGAGCCCCCCACCCCAAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030811-Fbxl19:NM_172748:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(12.3=24.1),PF0062824=PHD=PD(35.4=79.3),PF0030115=Rubredoxin=PD(60.0=93.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAGGCTGAGGGTGTTA
R:
TGGTTCCTCTGTCAGCTTCCA
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: