HsaINT0062650 @ hg38
Intron Retention
Gene
ENSG00000099364 | FBXL19
Description
F-box and leucine rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr16:30927573-30927963:+
Coord C1 exon
chr16:30927573-30927659
Coord A exon
chr16:30927660-30927744
Coord C2 exon
chr16:30927745-30927963
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CCAGCTTCTGTCCCGCCTAGGAT
3' ss Score
7.61
Exon sequences
Seq C1 exon
ATGGGGAAGGCTGAGGGTGTCATCAATGCAGAGATCCCCAACTGCTGGGAGTGCCCTCGCTGCACCCAGGAAGGCCGCACCAGCAAG
Seq A exon
GTAGGGGCTGGGCTGGGCTGAGCTGTGGGTAGGTGGGTGTTGGGGAGCTGTGCAGGTCCTCACCCCCAGCTTCTGTCCCGCCTAG
Seq C2 exon
GATTCAGGTGAGGGGCCTGGCCGCCGTAGGGCCGACAACGGCGAGGAGGGCGCCAGCTTGGGGAGCGGATGGAAGCTGACAGAGGAGCCACCGCTTCCACCGCCCCCGCCCAGGCGCAAGGGCCCCCTGCCTGCCGGGCCCCCCCCGGAGGACGTGCCTGGGCCCCCCAAACGAAAGGAAAGGGAGGCAGGGAATGAGCCTCCCACCCCAAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099364:ENST00000562319:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(12.3=24.1),PF0062824=PHD=PD(35.4=79.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGGTGTCATCAATGCA
R:
GGCTCCTCTGTCAGCTTCCAT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development