BtaINT0061290 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040555 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr25:27325280-27325672:+
Coord C1 exon
chr25:27325280-27325366
Coord A exon
chr25:27325367-27325453
Coord C2 exon
chr25:27325454-27325672
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CCCAGCTTCCATCTCCCCAGGAT
3' ss Score
8.53
Exon sequences
Seq C1 exon
ATGGGGAAGGCTGAGGGTGTCATCAATGCAGAGATCCCCAACTGCTGGGAGTGCCCTCGCTGCACCCAGGAAGGCCGGACCAGCAAG
Seq A exon
GTAGAGGCTTGGGTGGGTGCCAGGCTCTGGGTAGGCGGGAGATCGGGGGTTGGTGCAGAACCTCACCCCCAGCTTCCATCTCCCCAG
Seq C2 exon
GATTCAGGTGAGGGACCAGGCCGCCGCAGGGCTGACAACGGCGAGGAGGGCGCCAGCCTGGGGAGTGGATGGAAGCTGACGGAAGAGCCGCCACTTCCACCACCTCCACCCAGGCGCAAAGGTCCCTTACCTGCTGGGCCCCCCTCAGAGGACGTGCCTGGGCCCCCCAAAAGAAAGGAGAGGGAGGCAGGGAATGAGCCCCCTACCCCAAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040555:ENSBTAT00000056997:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(12.3=24.1),PF0062824=PHD=PD(35.4=79.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAGGGTGTCATCAATGC
R:
GCTCTTCCGTCAGCTTCCATC
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]