HsaINT0062650 @ hg19
Intron Retention
Gene
ENSG00000099364 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:25300]
Coordinates
chr16:30938894-30939284:+
Coord C1 exon
chr16:30938894-30938980
Coord A exon
chr16:30938981-30939065
Coord C2 exon
chr16:30939066-30939284
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CCAGCTTCTGTCCCGCCTAGGAT
3' ss Score
7.61
Exon sequences
Seq C1 exon
ATGGGGAAGGCTGAGGGTGTCATCAATGCAGAGATCCCCAACTGCTGGGAGTGCCCTCGCTGCACCCAGGAAGGCCGCACCAGCAAG
Seq A exon
GTAGGGGCTGGGCTGGGCTGAGCTGTGGGTAGGTGGGTGTTGGGGAGCTGTGCAGGTCCTCACCCCCAGCTTCTGTCCCGCCTAG
Seq C2 exon
GATTCAGGTGAGGGGCCTGGCCGCCGTAGGGCCGACAACGGCGAGGAGGGCGCCAGCTTGGGGAGCGGATGGAAGCTGACAGAGGAGCCACCGCTTCCACCGCCCCCGCCCAGGCGCAAGGGCCCCCTGCCTGCCGGGCCCCCCCCGGAGGACGTGCCTGGGCCCCCCAAACGAAAGGAAAGGGAGGCAGGGAATGAGCCTCCCACCCCAAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099364-FBXL19:NM_001099784:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(14.0=26.7),PF0062824=PHD=PD(36.9=80.0),PF0030115=Rubredoxin=PD(62.2=93.3),PF133971=DUF4109=PU(66.7=93.3)
A:
NA
C2:
PF133971=DUF4109=PD(29.3=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGGTGTCATCAATGCA
R:
GGCTCCTCTGTCAGCTTCCAT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)