HsaINT0062651 @ hg38
Intron Retention
Gene
ENSG00000099364 | FBXL19
Description
F-box and leucine rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr16:30927745-30928628:+
Coord C1 exon
chr16:30927745-30927963
Coord A exon
chr16:30927964-30928466
Coord C2 exon
chr16:30928467-30928628
Length
503 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTCCCTCTCACCCTGGTAGGTG
3' ss Score
10.09
Exon sequences
Seq C1 exon
GATTCAGGTGAGGGGCCTGGCCGCCGTAGGGCCGACAACGGCGAGGAGGGCGCCAGCTTGGGGAGCGGATGGAAGCTGACAGAGGAGCCACCGCTTCCACCGCCCCCGCCCAGGCGCAAGGGCCCCCTGCCTGCCGGGCCCCCCCCGGAGGACGTGCCTGGGCCCCCCAAACGAAAGGAAAGGGAGGCAGGGAATGAGCCTCCCACCCCAAGGAAAAAG
Seq A exon
GTGAGCCACGGAGCACGCTCACTAGGCTTGTCCTGAGGAATTCTGGGAGCTGTAGTCCTGGCTGGTTCTGTGGGGCTGTGTGGGCCTGGGAGCGTGCTCTGTGGGTTCCCCAAGGACTGTTGGGAGATGTAGTTCAGGAGTTGGGTGGGGGGAGGATAGAGCATGCTCAGTGTGGAGGAGGGGGGGGACAGGTGAGGTGAGCTGGCACTGCAGGAAGCTTTGGGAGCCCTGGGTGGGTTAGGGAGGCAGGAGAGAGCATGCTCAGATCATCCCTGCATGAGAGGAGGGAGGGGCTGGAGAGGGCCTGAGGGGAGGAAAGAGGAGATGGAGCATGCTCAGTGGGCTAGGACGCTGGGTGCAAGGTGAGCATGCTCAGAGTTATCCCTGGGACGGGGGCTTCTGGGACTTGTAGTCTAAGAGGAGGGCATGGACCTTAGATTTCTGGCCCATGAGGGCCTAATGGGGTCTCTCCCTTCCTCCATATCTCCCTCTCACCCTGGTAG
Seq C2 exon
GTGAAAGGAGGCCGAGAGAGGCACCTGAAGAAGGTGGGTGGAGACGCCTGCCTCCTCCGAGGATCGGACCCAGGCGGCCCGGGCCTGCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099364:ENST00000562319:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCAGGTGAGGGGCCT
R:
GAGAAAGCCTGGCTCGGATTC
Band lengths:
344-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development