BtaINT0061291 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040555 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr25:27325454-27326332:+
Coord C1 exon
chr25:27325454-27325672
Coord A exon
chr25:27325673-27326170
Coord C2 exon
chr25:27326171-27326332
Length
498 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTCCTTCTTGCTCTGGTAGGTG
3' ss Score
10.11
Exon sequences
Seq C1 exon
GATTCAGGTGAGGGACCAGGCCGCCGCAGGGCTGACAACGGCGAGGAGGGCGCCAGCCTGGGGAGTGGATGGAAGCTGACGGAAGAGCCGCCACTTCCACCACCTCCACCCAGGCGCAAAGGTCCCTTACCTGCTGGGCCCCCCTCAGAGGACGTGCCTGGGCCCCCCAAAAGAAAGGAGAGGGAGGCAGGGAATGAGCCCCCTACCCCAAGGAAAAAG
Seq A exon
GTGAGCCAGGGAGCATGCTCATTCGATCCAGCCTAAGGGATTTGGGGAGCTGTAGTCCTGTTGCATTTGGGGAGAACCTGGGACATTCAGCTTCATGGGTTCCCCCCAGGGATTGTTGGGAGATGTAGTTCGGAATTTCAGGTGGGAGGATGGCGCATGTTCAGTGTGGAGGAGAGGTACAGGTGAGAAGCTACTGGCGCTGGGCTGGACAGGGAAGCTTTGGGTGTTTTAGGGAAGAGGGAGAGAGCATGCTCAAATTAGCTGCTGCAGAGGAGGAAGGAGGGGCTGGAAAAGGCCTGAGGGGGAAGAAAGAGGAGATGAGAGCATGCTCAGTGAGCCAAGACACTGGTTACCCGATGAGCATGCTCAGAGTTCTCCCTGAGGTGGGGGCTTCTGGGATTTGTAGTCCTAAGAGGTGAGCATAGATCTTAGTTTTGTGGACAACCAGGGGTTAATGGCGTTTCTCCCTTGCCCCCTGTCTCCTTCTTGCTCTGGTAG
Seq C2 exon
GTGAAAGGAGGCCGAGAGAGGCACCTGAAGAAGGTGGGTGGAGACGCCTGCCTCCTCCGAGGATCGGACCCAGGCGGCCCCGGCCTTCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCTTTCTCGTCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040555:ENSBTAT00000056997:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACAACGGCGAGGAG
R:
CCCAGTTCTCGGGAGGGAG
Band lengths:
349-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]