HsaINT0062651 @ hg19
Intron Retention
Gene
ENSG00000099364 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:25300]
Coordinates
chr16:30939066-30939949:+
Coord C1 exon
chr16:30939066-30939284
Coord A exon
chr16:30939285-30939787
Coord C2 exon
chr16:30939788-30939949
Length
503 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTCCCTCTCACCCTGGTAGGTG
3' ss Score
10.09
Exon sequences
Seq C1 exon
GATTCAGGTGAGGGGCCTGGCCGCCGTAGGGCCGACAACGGCGAGGAGGGCGCCAGCTTGGGGAGCGGATGGAAGCTGACAGAGGAGCCACCGCTTCCACCGCCCCCGCCCAGGCGCAAGGGCCCCCTGCCTGCCGGGCCCCCCCCGGAGGACGTGCCTGGGCCCCCCAAACGAAAGGAAAGGGAGGCAGGGAATGAGCCTCCCACCCCAAGGAAAAAG
Seq A exon
GTGAGCCACGGAGCACGCTCACTAGGCTTGTCCTGAGGAATTCTGGGAGCTGTAGTCCTGGCTGGTTCTGTGGGGCTGTGTGGGCCTGGGAGCGTGCTCTGTGGGTTCCCCAAGGACTGTTGGGAGATGTAGTTCAGGAGTTGGGTGGGGGGAGGATAGAGCATGCTCAGTGTGGAGGAGGGGGGGGACAGGTGAGGTGAGCTGGCACTGCAGGAAGCTTTGGGAGCCCTGGGTGGGTTAGGGAGGCAGGAGAGAGCATGCTCAGATCATCCCTGCATGAGAGGAGGGAGGGGCTGGAGAGGGCCTGAGGGGAGGAAAGAGGAGATGGAGCATGCTCAGTGGGCTAGGACGCTGGGTGCAAGGTGAGCATGCTCAGAGTTATCCCTGGGACGGGGGCTTCTGGGACTTGTAGTCTAAGAGGAGGGCATGGACCTTAGATTTCTGGCCCATGAGGGCCTAATGGGGTCTCTCCCTTCCTCCATATCTCCCTCTCACCCTGGTAG
Seq C2 exon
GTGAAAGGAGGCCGAGAGAGGCACCTGAAGAAGGTGGGTGGAGACGCCTGCCTCCTCCGAGGATCGGACCCAGGCGGCCCGGGCCTGCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099364-FBXL19:NM_001099784:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF133971=DUF4109=PD(29.3=16.4)
A:
NA
C2:
PF133971=DUF4109=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCAGGTGAGGGGCCT
R:
GAGAAAGCCTGGCTCGGATTC
Band lengths:
344-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)