DreEX6074537 @ danRer10
Exon Skipping
Gene
ENSDARG00000103362 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr19:48354505-48355370:-
Coord C1 exon
chr19:48355284-48355370
Coord A exon
chr19:48354851-48355033
Coord C2 exon
chr19:48354505-48354537
Length
183 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTCTGCGTGCTCAGGAT
3' ss Score
8.66
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGGGAAAGTCTGAAGGCATCATCAACGACGAGATCCCGAACTGCTGGGAGTGCCCGAAGTGCCACAAGGAAGGAAAGACCAGTAAG
Seq A exon
GATCAGACAGACGGGCTGGGAAAGCGGCGCATGGATAATGGAGAAGTGAGCCGCTGGAAGCTGACGGATGAGCCTCCGGCCAGTAAGAAGAAGAGTCTCTCTGTGGAGGACGCGCCGCGCTCAGATGGACCCAAACGCAAGAAGGAGAAGGAGCTTCCGCAGGACAGTGGCTCCAAGAAGAAG
Seq C2 exon
ATTAAAGGTGCCCGTGAGAAACACCTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103362-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(35.4=79.3),PF0030115=Rubredoxin=FE(58.3=100)
A:
PF0030115=Rubredoxin=PD(2.1=1.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]