BtaEX6109878 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27450356-27451495:-
Coord C1 exon
chr25:27451362-27451495
Coord A exon
chr25:27450932-27451160
Coord C2 exon
chr25:27450356-27450632
Length
229 bp
Sequences
Splice sites
3' ss Seq
CCTGACCTGACCCCTTTCAGGGC
3' ss Score
9
5' ss Seq
TGAGTACGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
ACACTGGCTCCCCTCAGACAGTGCCTGTGACCCTCCTGGGGCCCAGGGCCTGTAGCCGCCTACACGCAGCCCTTGGGAGCATTCTGCCAGGGATGGTGTGTACCAGTGTTGTGGGCGAGCCGCCCAGCTGTGAG
Seq A exon
GGCCTGTCGGGGGCACCGCTGGTGCACGAAGTGAGGGGCACATGGTTCCTGGCTGGACTACACAGCTTCGGAGATGCCTGCCAAGGCCCCGCAAGACCTGCTGTCTTTGCGGCACTCCCCACCTACGAGAACTGGGTCAGCAGTTTGGACTGGCAGGTCTACTTTGCTGAGGAGCCTGAGCCTGAGCCTGAGCCCGAGCCCGAGCCCGGAAGCTGCACAGCTAACATGA
Seq C2 exon
GCCAGCCAGCCAACTGCTGACAGGTGGCTCTGGGACGCTGCAGTCACAGCAAGGCAACTCCCACGGAACTGCCTCTCTCCCATCCAGCCCCCGACCTTTCCCAGGCAGGTCCTACAGTGCAAAGGGCTCTGGGAAGGAACTTGCCCTGAAAGCTCCACCCTGCAGGACAGGGAGATGTCGCCCGTGGATGCCCCCCACCCAGCTCTGCGGTCCAATGCAGGCGTCCCAAGCTTTTCCTATTCTTCATCCCTCCAGATCCAATGACACCAGCCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.299 C2=0.167
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.4=100)
A:
PF0008921=Trypsin=PD(20.8=58.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCAGGGATGGTGTGTA
R:
ATAGGAAAAGCTTGGGACGCC
Band lengths:
293-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]