MmuEX1020998 @ mm10
Exon Skipping
Gene
ENSMUSG00000044139 | Prss53
Description
protease, serine 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:127885841-127887095:-
Coord C1 exon
chr7:127886950-127887095
Coord A exon
chr7:127886528-127886744
Coord C2 exon
chr7:127885841-127886281
Length
217 bp
Sequences
Splice sites
3' ss Seq
TGTAACCTGCTCCCTAACAGGGC
3' ss Score
8.81
5' ss Seq
CGAGTATGT
5' ss Score
6.61
Exon sequences
Seq C1 exon
GCATCAACTACCCCCAGACAGTACCTGTGACAGTCCTGGGGCCGATGGCCTGTAGCAGACAGCATGCAGCTCCTGGGGGCACAGGCATCCCCATCCTGCCAGGGATGGTATGCACCACTGTCGTGGGTGAGCCCCCTCACTGTGAG
Seq A exon
GGCCTCTCTGGGGCGCCACTTGTACATGAGATCAGGGGCACATGGTTCCTGGTTGGACTGCACAGCTTTGGAGACACCTGTCAAAGCTCTGCAAAGCCTGCAGTTTTTGCAGCACTCTCTGCCTACGAGGACTGGATCAGCAATCTAGACTGGCAGGTCTACTTCGCTGAGGAGCCAGAGCCTGAGGCTGAGACTGGAAGCTGCTTGGTCAACTCGA
Seq C2 exon
GCCAACCAGCCAGTTGTTGACTGGTGACTCTAGTTTACTCACAGGACGCCAGAAACGCCAGACAACTCCCACGTCAACACCCAGTTCTACACTCCTGCCCCTCCCCTCCCGGTCTTGTGGTTCCCAGCCCTGAGGCAGGTCCAACAGCTGGCTGGCTGGCTGAGAATGAGCCTGCCCAGAGATGCTTTTCATGTGTGCCATGGCCCCGCCCCCAAGTTCTGCTTTCCAACAGAGATGTCTCCAGTATTCCCTAGCCAATCCTTCAGATATAACCACACCAGTAGCTGTTGTGAAAAAAAAAGTTGTTTTTTTTTTCCTTGGGGGTGGGGGGTTTGGGGAGCAATTTCCTTTTTTAAAACTTAAATTGTTACAAAATAGATTTTAGAAAATAAGTTACAAACTATAGTAAAAGGCTCCCCTGTCACAGGCAGCTTTCGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.055 C2=0.077
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.9=100)
A:
PF0008921=Trypsin=PD(20.5=61.6)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCTGTGACAGTCCTGGG
R:
TCTGGGCAGGCTCATTCTCAG
Band lengths:
307-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types