RnoEX0070378 @ rn6
Exon Skipping
Gene
ENSRNOG00000026040 | Prss53
Description
serine protease 53 [Source:RGD Symbol;Acc:1566127]
Coordinates
chr1:199331439-199332291:-
Coord C1 exon
chr1:199332191-199332291
Coord A exon
chr1:199331787-199332003
Coord C2 exon
chr1:199331439-199331539
Length
217 bp
Sequences
Splice sites
3' ss Seq
AACCTGCTCCTCTCTAACAGGGA
3' ss Score
9.61
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGGCCTGTAGCAGACAACATGCAGCTTCTGGTAGCACGGGTGTTCCCATTCTGCCAGGGATGATATGCACCACTGTTGTGGGTGAGCCACCTCACTGTGAG
Seq A exon
GGACTCTCTGGGGCACCACTTGTACATGAGATCAGAGGGACATGGTTCCTGGCTGGACTGCACAGCTTTGGAGACACCTGCCAAGGCTCTGCAAAGCCTGCAGTTTTTGCAGCACTTTCTGCCTATGAGGATTGGGTCAGCAATCTAGACTGGCAGGTCTACTTCGCTGAGGAGCCTGAGCCTGAGCCTGAGACCGGAAGCTGTCTGGTCAACTCAA
Seq C2 exon
GCCAACCAGCCAGTTGTTGACTGGTGACTCTAGTTTACTCACAGGACGCCAGAAAAGCCAGGCAACTCCCACGTCAACACCCAATTCTACACTCCTGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026040-'15-13,'15-12,16-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.250 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0008921=Trypsin=PD(29.0=42.1)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTAGCAGACAACATGCA
R:
GGGCAGGAGTGTAGAATTGGG
Band lengths:
199-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]