BtaEX6110583 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36372299-36376650:-
Coord C1 exon
chr25:36376361-36376650
Coord A exon
chr25:36372896-36373107
Coord C2 exon
chr25:36372299-36372440
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCCCACCCTTCCAGCTC
3' ss Score
9.8
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TTGCCGAGATGATGACAAGGCCGAAGAAGAATCGGAGGAGCCAGAAACGACCTGCCAGCCAGCTGACCTGGAGAGAGCCAAGGAGCAATGCCAGGCAGTCTTTCAGACTCCAGGCTGGGCAAGGTGTGCCAGCCGCGTGATCCTCAGTCCCTTCTTGGTCAGATGCACCGACAGCCTCTGTGAGTTTGGAGGCCTGAGCAGCACCCTCTGCCAGTCTCTGCAAGCCTTCGCGACCGCCTGCCAAGCCCGGGGCATCAGGCCTCCCATCTGGAGAAACAGCAGCTTCTGCC
Seq A exon
CTCTGGACTGCCCCCCCAACTACGTCTACACCAACTGCTTTCCCCACTGCCCCCCAACCTGCGACAACCCAGAAGGCCGGTGCAAAGGCTCCAGCGGTCCCTCCGTCTGCCAGGAGGGCTGCGTCTGTGAGCCCGGCTACGTGCTCAAGGAGCGGCGGTGTGTGCCCAGGAGTCAGTGTGGCTGCCGGGACGCCCGGGGCAGATTCCTCCCC
Seq C2 exon
GAGGGTAACGCGTGGTTCTCCAACAGCTGCTCCCAGAGGTGTACCTGCGGGGCGGGAGCCATTCAGTGCCGGCCCTTTGCCTGCCCCGAAGGCTCCCGGTGTGAGATCAACGAAGACGACAAAGAAATCTGCAAACCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432-'29-32,'29-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=76.5)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.3),PF127142=TILa=PU(17.9=14.1)
C2:
PF127142=TILa=PD(78.6=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCAGACTCCAGGCTGGG
R:
CTTCGTTGATCTCACACCGGG
Band lengths:
307-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]