DreEX6005249 @ danRer10
Exon Skipping
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26082398-26085315:+
Coord C1 exon
chr7:26082398-26082702
Coord A exon
chr7:26082957-26083165
Coord C2 exon
chr7:26085171-26085315
Length
209 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCGTTTTTTTTCCAGCTC
3' ss Score
10
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
TCTAATTACTTTGTCTCGTTCCACCATCCGCAGCTGCCAACCTGATCCACGACCTGACGACAAACCAAACTGCGACGAGAGTGAAGAAGAAATCTACAAGGCGCAGTGCGCTTCCACTATCCTGTCTGATCGCTTCAAGCCCTGTCACTCTCTCATCCCTCCCGAGGCCTTCCTGGGGAACTGTGTCTATGATATGTGCGAATATAATGGCATGCAGTCGACACTCTGCGATAACGTGGAGGCTTACGCTCAGGCCTGTCATAGCGCTGGAGTCACTATCAGCTGGAGGAACAGCACCTTCTGCC
Seq A exon
CTCTCCCGTGCCCACCCAACAGTCACTACTCTGAGTGCACACCTCCATGTCCTCCTACTTGTGCTGACCTCTTCCCCATTTTCTGCCCATTACCACCCAATAGCTGTGTTGAAGGCTGTCAGTGTAATGCAGGTTTTGTGCTAAGTGATGGCAAGTGCGTTCCTCTCTCAAGCTGTGGATGCGTTGACAGCAATGGAGAGTATCACGAC
Seq C2 exon
GTGGGGGATTCCTGGATAACAGACCGCTGCACACAGAAATGCACCTGCAGCCTTGGAGGACTGTTGACCTGCAATGCCTTTGAATGCAATGAAAACTCAATCTGTGATCTTGACAGCAATGGAGACCGTTACTGCAAACCCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781-'46-49,'46-48,47-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=70.9)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.5=14.3)
C2:
PF127142=TILa=PD(78.9=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGTCACTCTCTCATCC
R:
TGCAGTAACGGTCTCCATTGC
Band lengths:
304-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]