HsaEX7004287 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100779446-100786141:+
Coord C1 exon
chr7:100779446-100779750
Coord A exon
chr7:100784623-100784834
Coord C2 exon
chr7:100785997-100786141
Length
212 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTCCTTCACCCACAGCTC
3' ss Score
10.98
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TTGTCAGAGTCTCCTGGTAGATGAGCAGCAGATTCCAGCGGAACAGCAGGAGAACCCGAGTGGAAACTGCAGGGCGGCCGACCTCCGCAGGGCGCGGGAAAAGTGCGAGGCAGCGCTCCGGGCTCCTGTGTGGGCCCAGTGCGCCTCCCGCATAGACCTCACGCCCTTCCTGGTGGACTGTGCAAACACCCTCTGTGAGTTCGGAGGTCTCTACCAGGCCCTCTGCCAGGCTCTGCAAGCCTTCGGGGCCACCTGCCAGAGCCAGGGGCTCAAGCCCCCACTCTGGAGAAACAGCAGCTTCTGCC
Seq A exon
CTCTGGAATGCCCTGCCTACAGCAGCTACACCAACTGCCTTCCCTCCTGCTCACCCTCCTGCTGGGACCTGGATGGCCGGTGTGAGGGCGCCAAAGTCCCCTCTGCCTGCGCTGAGGGCTGCATTTGTCAGCCCGGCTATGTGCTGAGTGAAGACAAGTGTGTCCCCAGAAGTCAGTGTGGCTGCAAGGATGCCCATGGTGGCTCCATCCCT
Seq C2 exon
CTGGGCAAGAGCTGGGTCTCCAGCGGTTGCACGGAGAAGTGTGTCTGCACGGGAGGAGCCATTCAGTGCGGGGACTTCCGATGCCCCTCTGGGTCCCACTGCCAGCTCACTTCCGACAACAGCAACAGCAATTGTGTCTCAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'34-37,'34-36,35-37=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=72.8)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.3),PF127142=TILa=PU(17.5=14.1)
C2:
PF127142=TILa=PD(78.9=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCCGAGTGGAAACTGC
R:
AGACACACTTCTCCGTGCAAC
Band lengths:
302-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains