BtaINT0000268 @ bosTau6
Intron Retention
Description
Bos taurus sterile alpha motif and leucine zipper containing kinase AZK (ZAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001205493]
Coordinates
chr2:23471893-23475818:-
Coord C1 exon
chr2:23475679-23475818
Coord A exon
chr2:23471956-23475678
Coord C2 exon
chr2:23471893-23471955
Length
3723 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
ATTTTTTTTTTTTTTTACAGTCA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GTGACTCTTCAGCAGAGATGAGTGTGTATGCAAGCTTGTTTAAGGAAAACAACATTACAGGAAAGCGACTGCTGCTTCTCGAGGAAGAAGACTTGAAAGACATGGGCATCATCTCCAAGGGGCACATCATCCATTTAAAG
Seq A exon
GTACCTCAGAAAGGAAGGCTGTTCCGTCAGCAAATGTCTACTGAGCGCTTACTATGGAGCGGGTCATGTGTCGTGTTAGGGGCTGAGCTGATGCTCACAGCGCCGTACTTCATACTGTTGAGCATTAGCTGCTGCCCCCTGGGACCCCTACTTCCTCCACATAATCCCCACACGAAAGGGTTGGACTTTGGGTCCAGCAGAAGTCACCTGGATACACCTGCATAGCTCCCCGTGTCCTCAGGATGTCCTTGGTCTAGTGGAGAAGACAGGTATTGATCGTGCAAAAATGATTAACATGACAGCTTTAAGAAAGGCCACAAAGGAGAGGTGAGGCTGGGCTGAGGAATGGCTTCTGTGAAGGAGTTACGAAGGAATTGAGAGCTGAAGAACCAGGAGGTGTTGAGCAGGTGAAGGACACAGGGAGGAGGTGTTCTGGGAACAAGGCACCGCCTGTGGAGAGACCTCGGTGTGGGAGGAAGCGTCATGCACACTACGGCCGTGTGCACAGGCAGAGCTGCCAGCCCCAGGCAGTAGTAGGAGGCGACTTCCTTCAAGGCCAGACTGGATATCCATTAGGGACCCCAACAATGCCAGAGCATGTCTGTAGACTGAGTGAAGCTTGAACCACCACAGCATCTAAAGCCATGGGAATTGTGTGTTCAGTCTGCAATCTCCCAAATTTTGACCAAACAGACACCACTATATGTATATTCTTATCCCTTATCTTCTTGGGAAATCCTAACATTTCCCCCAAAAACTTCAGTTTTGAACCCTTTCAAGGCTAAACCTCTGTTTTTGTTTTGCTTTTTTTTTTTTTTTGTAGTTTAACAACCAGATCTGGTTTTTTGTTTCTTTGTTATGTTTTGCTTTTTAGTTACTCAAACCAAACCACACTTGCTTGCATCTGTGTGCACCTTGTTATTAATCAGAAGTGTGTTTCAAGAGAGATCTTATGAGGAAATCAAATTTGCTCTCCAGACCACCTCAACCCCAGTGTCAGTGGGTGGAGGGGTAGGCACGAGTTAGAAAGAAGAGAGATAGAATAAAGAAGGAAATGTTGAAAAAGCAACTTCTTATCCAAATCCACATAGTGACAAAGGCTCTACCAACATGCCAACAACCATTCCCTTTTCCTCAATTGGGGCTACTGATACCGGGCTTTCCAGGGAAATCTTCCCTGAGGTCCAAAGAGAACACATCCACTCCTATCTTATGGGCCCTGGATCCATATAAAGATATCCTTACAGCCCCTCAGCACCCTTTGGATGAGGGCTTAGCCTTAACCTATCATCTGCTCCCTCTGAGAAGATGGACAGGAAACCTCATACACACACATACACCTCAAATGCTGGTAAATAATTTAATCTCAACCTATGACTGTGGGCAAATCCATCCTGAAAAGCAATGCTGGCTTAGATGGCCCACAGTAGGAAATATTCTTTTCACTCATACAGAAAGAGGAGTTTCAGGGTTCAAAGAGAGAGATCTGGTCAATCTTGTCCTATTTAGCAGATGCCAAAAAGAAGCTCCCAACTCCCCTTTGCCTCTCTTGCAGCCACAGTGATTTCAATATTCCTAGACCCAGCCTAGGACAGTCTAAGTTTCTCTCCATGCTGGTTGGTATCATTAAAGCAAGCAATGTCCAGACTTACTAATTATTGTTCAACAAATACAGTGGATACCTGCTAATCAGAGTCCTGGGCCTGTGAATAAACAAAGAATCCTGCCCTTAAGAAATTTACATCCCAGGGTACTCTTTCTGCCCCCTTCTGATGCCTATGTCAGAAGCTTTCTCTATCTCCTTCATACTTTAATAAAAAAAAAAAAAAGAAAAGAAATTTACATCCCAGAAAAGAGATAAAACATGTACATACAGCTTCTTTTAATTCGGAGTCTTGGCAGTTGGGAGTAGAGTGTCTGTCCTGAGTTTCAAAGGAAGGGTGTGACCAGCATCTGCGGGGACTGGAGACACCCCTCAAGCTCCTGGAAGAGTCTGCTTGTGCATAGAAAGACAGTCGGTCCCCAGAGGTGGGGATCTCAAAAGTCAGGTTTGCAGACCCTCCACCTCTGCCAAAGCCAGGGCCATGTTAACAGTGGCTGTCCCAGGGGTGGGGAAGGGTTGGGGGTGCTCAGCCCACAGATGATACTCTCTCAATCTCAGCTGGGGTCCCAGGCACTTCTGACAAATAAGCTTATATGAGAGGGAAAGAATAAGGGGAAAGGATCATGGAAACAGACCTTTCCATGGGAGGTCTGGGAGCATCCTGCATATATTCTTTTTAAAAAAAGAAAAAAAAAAGATTATTTTCCATTACGGTTTATCTTAGGATATTGAATACAGTTCTCTGTGCTATACAGTCAGACCTTGTTGTTTATCCATTCTACGTACAATAGCTTACATCTGCTAACTCCAACCTCCCACCCAACCTCCACCCCCTTGGCAACCACCAGTCTGTTCCCTATGTCTGTGATTCTGCTTCTGTTTTCATAGAGAGGTTCGTTGGTATCATATTTTAGATTCCATGTATATTGGGTTGACCAAAAATTTAGTTTGGTTAGCGAATACATTGTTCAATAAAGTCTTGGTGAAAATGAAAAATGTCTTTTATTTTTACTTAAAACTGAATGAACTTTTTGGCCAAGCCAATGCAGAAAGGGATATATTGCCTATACTCTTGAGGCAATGAAGATAAAGAAAGGATCCTTCAAGTTGGGCCATTCGGGATGGGACACCACAAAGGGACCTCCAGCCTGGAGGAGCCCACCTACTCCTTGTCAGAGCGCTCTACACACACACACACACACACACACACACACACCACCCCACGCCTCCGATCCTGAGGGTGAGAAAGTGCCCTCCATGCTCCGCTCTCCCACTGAGGCAGGCAGGGCATTTGGTAAACCTTCTAGGTGAGTGAGCCTCTCAGCGCACACATGGTAGATCATAAAACTGGAAAGTGGACGGTCTGCCCACTACCCTTTCGCTATTTGATTGTCCTGTTCAGCATGTCTTGGCTCCTACCTCATTGAGCCTGGAAGCCTGTGTAGAAAGAATAAAGCCAAACATCCAATCAGTGCTGATTACATTGTCAGGTGTAAACAGCTTTCATTTCACTTTAAAAAATGCATCTCATTTTTCTCACATTGGTACTTTTTTTACTCTCTATGTGATATGTTTGGTTCACAGAAAAGCTGGATTATACCTGATGAGTATGAAAAAGAATCATAATTTAAATTGTCCTCCTTTCCTTTAAGAGTTCTTTGTGCTCCATTGGGGGACAGAGCTTTGGACACAAATCCATAGAAAAGCCCACACAGGGCAGTAAACCCTTCAGTGATGTTTCAGCCCTAAAGGGAGCCTCTGGTGATATATTCGTGTTCTTTGTTGTTTTTCCCACAGTTACTTGGGGTGATGACTGCATTCTGTACCCTAGAATATTAACTTGTTACTACTGTACTCTACCAGTGTTTGAAGAAAGCTTTTACTTATTTTTCTACTCTGAGATTTAACATCTTTAAAATATCTTCCTGTTCCATTCAATAATTATAAAACTACCTATAATACTTTGAACAATCAGGTTTATTCTCAATAGATGTTGGATATTAACATCCCCAAGGCATTTTGTGGAATACATAAATAAAGAATGCCTTTATATGTGCACAATAATTTTAATCCTTTCTTGGCATTATCAGATCATTAATAATTTTTTTTTTTTTTTACAG
Seq C2 exon
TCAGCCATTGAGAAATTAACCCACGATTACCTAAACTTGTTTCACTTCCCACCACTGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001083:ENSBTAT00000038527:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=FE(64.8=100)
A:
NA
C2:
PF0764712=SAM_2=PD(8.5=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]