MmuINT0022486 @ mm10
Intron Retention
Gene
ENSMUSG00000004085 | Map3k20
Description
mitogen-activated protein kinase kinase kinase 20 [Source:MGI Symbol;Acc:MGI:2443258]
Coordinates
chr2:72412071-72416603:+
Coord C1 exon
chr2:72412071-72412210
Coord A exon
chr2:72412211-72416540
Coord C2 exon
chr2:72416541-72416603
Length
4330 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
GTGATTTTTCCTCCTTGCAGTCA
3' ss Score
9.97
Exon sequences
Seq C1 exon
GCGAGTCTTCAGTAGAGATGAGTGGATACGCAAGTTTGTTTAAGGAGAACAACATCACAGGCAAGCGGTTGCTGCTTCTGGAAGAGGAAGATCTGAAAGACATGGGCATCGTCTCCAAGGGACACATCATTCACTTTAAG
Seq A exon
GTACATGGTAGGAGAACATCAATAAGTCAACTGAGCATGTGATGGATGCTGGCCCACGTGTTAGCACATAGAGAGGAGAGCATCATGCTGTAGGATGTGAGGTGCTGAGATACCTTCAGGCTTGGCCCTAACTAGCTGCCACACCCAGGCTGCCCCTGTTCCTGCCTCAAAAGCCCACGGCAAACAGGTTAGCCTAGCACAGCAGCCGTTACCTGGGTTAAATGGTGTAACACTGATGTAATGCCAGGAAGCCTCTAGTCTAGGGGGAAAGTGAAGTATACTATTCTGTACAATGACACCTGTGAGAGATGCCACAAAGGAGAGGGACCCAGGATGTGGGCAGACATCTGGAAGGAAGCCACGAAGGAACCAGAGCCCTTTGTTTGGCTTTCTAGATAACTACTCTAATGTTGTAACAAATACAGACATCTATAGGATAATTTTATTAGAAATATGTTTCAAAAGAGGCCTTATAGAATGTAAGATAGACTTTATGCCTACAGTCCTGGCAGGAGAATTGCAAGTTCAAGGCCAGCCTGAGCTATGTAGTAAGCTATGTCCCCTATCTCTCCTGCAAAATCAAATTGCTCCCCAAATCTCAATCCTAGGATGGATGGAAAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGATGGATGAATGGATGGAGGAATGTATACAGATTAGATGGGACAGGGGGTAAAAGGAACACAGCTCTTCCAAATCCATACCTCCCCAAAGCCATGTCAACAAATCTCCCTTTACTCGGAGCACCTCACTCTATGGCTGCTCCAGAGAGAACCATTCATTCACATTGTTCCAGAGAGCCCCGGCCCATGTAAGAACATGTCTATAGTCCCTTGGCAACAGTCTCTTGGGACAATGACTGGACACTAACCCACCATACGCAAGACAAAGCAGGACCATGCTGTCTTCCCCTACATGGGGGACAAGAAGACACATGCATAAACATCAATTGGCGGGGGTGGGGGGCCCAAGGGGGACTCTCAGTACAGAGGTATCTGAGCTCCCAAAGACAAAACTTTGTAAATCTTGTCCTGTGTAGCAGATGCTAAGTAAGATACTCCCACTTGCCCTTACCCTCTTCCACCTTTACCAATTTTCTTTGGGAATCAGCCAGAGGGGAAAGCAGTTGCAAGCTGTGATACTTTACCAAGCCAGAAGTGATTAAATATTCCTGACATAGCCAGGATAACAGAAGTGCCCCATCTATGCTGGTTGGTGTTACTGGACAAGTAATATCCCAGCTTATTTACCATGTATGGCTCATCAAATTCAGTGCATGTCTGCTTGCAAGGCTGGGCCTGTGGAAGTTCAAAGAATCACCCTGCCCTTAAGGAATTTACATCCCAGAGAAGAGATAAAACACAGTCATACTTCTTACAGGCAGTTGGAAGAAAAGGGACAGTCTGTTATCTTGACCAGTGGAAAGAGATGGAGAGGCGAGGTCCCGTGATGGGGGATGAGGGGTGCGTGGAGCTGGAGCTGGGAACAAGGAAGCATCAGAAGGGGAGTGGTGGAGCACAGAGAGCTACAGAAGTGGGGTGCCTGTGTTCAGAGGAGCAGTGGGTGGCTTGCTGGTCTGGTGGAAGTGTGAGGCTGGAGCAGACCTGGGGTTAGCAGAAGTGGAGTGAGGTGGCTCAGCCCCTGAACTACTTCCAGCTTCGGGCTGGACCTCTGGGATGTGACCAGAGCTGGAGAGAGCATTGAGAGCTCACTTGGCTTCTGGGAGTTTTACCGTGGAGTAGGGAGGAGAGGCTAGGTTTTAAACTCCAGGGAGGCAGTTAAAACAGGCAAGAAATGGGGCCTGCCTGGCTCCTTAGCAGAAATGGGGACAGAGAAAAAAGGAGGTCGGCGAAGTTGCTGGTGAAGGAGGACGCAGTAAGATTGGAGCGCGTGCTGTAGCATGGATGAGCCTGGCGGTGGTGCTCACTGGAAAGACAATGGATGAGCCTGGCCGTGGTGCTCACTGGAAGACAATGGATGAGCCTGGCCGTGGTGCTCACTGGAAGACAATGGATGAGCCTGGCAGTGGTGCTCACTGGAAGACAGACGGGGAGGGCCACAGTGGTGTTCTGTGGGTATGCATATCCAGAATAACATATCTTAGAGGTGGCAGTTGCCAGTGGGTGGGACAAGGAGGGAAGGAAGGGGTAGTGGTTGTTTAATGAGTGTCACAGTCCCTGGGGGGTGATGTTTGGAAAACACTGGAGAAGAAAGGACTGCATAGCCCTGTGAAGGCAGTAGATGCAGCTGGAGGAAACACTTGGAAACAGCTACTTTTATGGTACTCAAATTTCACCCCATTAAAAAATAATACAGGCCGGAAGAAACAGCCCCGAAGGTAACGTGCTTGCCATACAAGCATAAGGACCTGGGTTCAATTCCCATAGCCTGAGTAAAACTCTGCAAAAATCCAGGCACGTTGCTGTGCGTGTGCAACCCTAGTGTAGGGGAGCAGAGACCGGCAGGTGCCTGAGGCCCCAGAACCAACCAGCCTAGCCTACTGGGTGAGCACCAGGCAGGGAGAGACTCTGACCCAAGAAAATAAATTTCTGTGAGAGGGAGAGATGGAGGGATGGAGGGTGTTGTAACTGGTTCTGTGTGCGGATGGTTCTGGTGTGAATGGGCTTTGGAATGAGAGCACGATGGGCATTCCAGACCAGAGACGTTCCTCCTGGTCACTGCTCGCATGCTCACACTGCCTGTGAGAAGCTATCCCCTGTCCCTGTTCTGTCACTGAAAGGTACAGTCATCATGGGACCGAGTCTGTCACCTAAAAGGAGGTGATAAAACTGCGGGCTGGCGCAGGGTATCCACCATCCCTTTGCCCAGGATCCCTCCCGCTGAACCTGGCTCCCCTGAGCTTCCTGGGAAGGAGCAGGGTACTAAGACAAAAGCTAAGCATCCCAGAAGGGTTCGATACATTGTTAGAAGATTTGTTTTGCTTTAGGAGAAAAAAAAAAAAAAGACACATCCACTTTTCCTGGGCTGGGGCTCTTTTCTACATGGTCAGTTTCCTGAGAAGCTGAGTAACAGCCGGTGAATTCTCCCAGCCTTGTCATCTAAAGCAATGGTTCTCAACCTTCCTAACTCTGAGACCCTTTAATACAGCTCCCCATACTGTGGTGACCTCCCCCCACCCAACCATAAAATTATTTCACTGCTACTTCATAACTATAATTTTGCTATGGTTATGGATCGTAATGTAAATATCTGAAATGCGGGGTATCTGATATGCGTTCCTTCTAAAAGAGTTGTTTGACACCCACCACCCCCTCCACAAAGGGGTCACCACCCAAGGGTGGGGAACTGCTGATCTAAAGTGTCCTCTCTATGAGTCTCGGTGCCCCCTAGGGGTAAACTGGTGCATGATGAGGCTACAGCCTCGCTGATGGCTTTGCTCCTAAATTCCCCTCCTGTCCATATGGTAAATGCTGGGGCATTAACTTGCCCTACCCAGCTCAGATCTGAAGGACAGCTTTATCTATTGCATACCCTGAGGTCTAACATCCCTGTCTGGCAGCTTTATCTATTGCATACCCTAAGGTCTAACATCCCTGTCTGGCTTAGTGGGGGTTTCACTTCCAGCGTCATTTCAGCTTGGCTTTTTCTCATTCATTTTTTTAAAACTGAATTCTATTTTCATAGCTTATATTGGCCTTGTTACTTCATTCGTCTCTCGCCTTTTATCTTGAGTTGTCTGAACATAGTTTTAATCCTATTCTTGAATTCTTTGCTAGGAGTTCTTTGGGGTCATTTCCCTGGAGTCTCTTACTATGGGATAAGTAATTTGGGGAGGAGACAGGCTGTTCTGAATTTTCACTTTGTCTCTCTTTTGCACAGACTTGTGCATTTGGAATCACTTCCTTAAGTAGGAGTGTAGACTCAGGTCTGATGGTCAGGAGACTGCTTGCCTGCTAACACCTAGAGTCAGGACAACGGGAGAAGGTGGGCAGGGACTTCAGGGCCAAGGATCCCTTAACAGTTGGAAACAGGAGCTAGGTTGACTAAGAAGTGTAGCACAAACAGTAGAGGCCTGGCGGGCCTTACCTGTAGAGGAGCCGAATGGGCTGTGGTTTAATATCTCTAAAGTAGCCACGCCTGTTCCTTTAAGTGATGACAAGTTGATATCATGACTTTGACAATGAGACATATGCTTAACCAATGGTCGATGTTAACATCCCCAAGATAGTCTATAAACTACATAAAGAATCATGTTTTTTGTATGTGCAATAATTTTACTCCTCTTTGCTATCATCAAAGCATTAATGACGCCACGTGATTTTTCCTCCTTGCAG
Seq C2 exon
TCAGCTATTGAGAAGCTAACCCACGATTATCTGAACCTGTTTCACTTCCCACCACTGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004085:ENSMUST00000090824:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=FE(63.9=100)
A:
NA
C2:
PF0053625=SAM_1=PD(8.3=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types