GgaINT0047338 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18654457-18655829:-
Coord C1 exon
chr7:18655690-18655829
Coord A exon
chr7:18654520-18655689
Coord C2 exon
chr7:18654457-18654519
Length
1170 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
GATTATTTTTTTTTTTATAGACT
3' ss Score
8.17
Exon sequences
Seq C1 exon
GCGATGCTTCTGGTGAAATGAGTGCATATGCTAGCTTGTTTAAGGAACATCATATCACTGGAAAGCGACTGCTTCTTCTAGAAGAAGAAGATTTAAAGGACATGGGAATCATTTCCAGAGGACACATCATCCATTTAAAG
Seq A exon
GTATCTAGTAGTATATGTTGAACATCAGAGTAGATTATAGTGTAGGCATTGAGAGCGATTAAACAGTGTTATAGTAGTATTAACTATATATATATATATATATATATTTTAAGTTATAAAGCTAAATAGAGAGCTTGTTTGGTACAAAAAGAATCAGAGTTACAGGTTCATATGGCTCTGAAACCCAAGGAACCCTGAACGTTCTGTGAGGTGTGAAATGTGCCACGATCTTCATCCTCCTCCTCATTTATTAGTTTTGTTGGGGGCAGGATCAACAATACTGCTGGAGATTTGTCTAAGAGGGCAGAGCCATTTACCTAGCAGAAAGCTTTGGTTATCTTCAGAGTGCTGTCCCATAAGATTTCTCATAAGCTACGAGAGGATCAGGTATGGAGAAAGTTACTTGGAAATCTCTAAACTTCCCAACTTAGACTACTGTTAAGCTGATTGATGGCCAGGTTGCTTTGCTTGTAACGCTTTGTTTCATGGTCTTCTGAATATATAATGTTTGTTACTAATTTGGAAAATTGTGGTCTGGAAAACGTGATCACAACAGCAGTAATGGTATTAGTAATGTAGCCACAGGAGATAGTTACATTTCCTGGCTGTGAGCTTTGGAAAATGATCTCTCTAAAAGCAGCGTCTGGGATTCTGTTGGATTCTGTTGTGACTTTATACCACAATTTACCAGTAAAGCGATACTTTTATCCTAATTGCTAGTCCTGCAAATTTAGCCTCATCTCTGTAAGTCACAGAGATTTATTCCCCTTTGCTCATCAGCCATTTTTCCATAGCACACACCATTACTGATATCTTTAATTTACATTTCCTACAGGGAAAATTATTGAAACTTAATAAAGTCAATAATGCCCAAAATGAAAGATTTCGGCTTCCCGGGTTGATTGAGCATAAATAAAAACAACCCAAACAACCCCCAAACATTTCTTTTTTTCTGATTAAGCAGTTCAGATTCTGAATGCGAAATGTGGTTGATCTACCGAGACAGTTTCCAGAGCAGAGCTGTATTTTAAACTGCAGTCACATGCCCTGATGTAGCTGCAATGAAAACCACGGTGCATGCTGAACTGCTTTGCTTTTCATGCTGGCATTTGTGGTATTTGATGCTGAATAACGCTCATTTGATTTTGTTGATTATTTTTTTTTTTATAG
Seq C2 exon
ACTGCTATTGAGAAGTTAACCCATGACTACCTAAATCTGTTTCATTTTCCACCATTAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344:ENSGALT00000015215:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=FE(64.8=100)
A:
NA
C2:
PF0053625=SAM_1=PD(8.5=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCTGGTGAAATGAGTGCA
R:
TGGTGGAAAATGAAACAGATTTAGGT
Band lengths:
190-1360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]