BtaINT0000271 @ bosTau6
Intron Retention
Description
Bos taurus sterile alpha motif and leucine zipper containing kinase AZK (ZAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001205493]
Coordinates
chr2:23450390-23453465:-
Coord C1 exon
chr2:23453349-23453465
Coord A exon
chr2:23450465-23453348
Coord C2 exon
chr2:23450390-23450464
Length
2884 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TTCTAACTTCTATTTTTCAGCCC
3' ss Score
7.29
Exon sequences
Seq C1 exon
GACTGTAAGTGGAAAATGTATATGGAGATGGATGGGGATGAAATTGCAATAACCTACATCAAAGATGTGACATTCAACACTAACCTACCTGATGCAGAGATTTTAAAGATGACAAAG
Seq A exon
GTAGGGTTCTATTTACGGCTTAAAAGCTTTTTTGAATTCACAGATATCAAACAAAGACATTAAAATACCCCAGTGGTATGCTTTTGTGCTCATGATGTTCATACCAGCTCAGCTTCAAGCTGGCTGTTGAAAGGCACATTTTATTTAGCAGATTGAGATCATAATAGTTTTTTGTTAAAATTCCACTTATGCTGTGTGAACTAAAAAGTACTACAGAAAAGTGTCGTTTAATTTTTTTTTAACTTTCTTCTGCATTTCTTTAGGCATATTCTGTCATTTATTAAAGAAAAGAAAATGCTAATGATGAAAATATTTACCTTGAATTTTGGGTCATTTTAAACTTTAAAAAACTTGTCAGGAGAAGATTTCTTGAATTTCTGGAAGGACTTGGATGAGAGTATCCAAAAGGCACATATTGCAGTCTTCATGGTTTCCTTGAATTCACCCCTGTGAATTCCTGTAGTGACCAGACAGGATCTTACTACTCTGGGGTCAATAGTAGAAGCACACCCATTAAAATGCTGAAGACAGACTTAGAGAAATGCTTAGCTTCTCTTCAAAATAATCATACTGAAAATATACATATAAGACTTCAATTGTAGAAGGTCAACCACTCAGTTAAATAACCACAATGTTAACAGGACAGTTACCCTAAACGTAATAAAAGGCATGAACTCTATCTACTACACGATCGACTGCTTATTCGGTTTCAGGGAAGAAAATGAGGCTGGCAGCAACAAGACAGGGTGCAGACACAAGTGGGGGAAGTGAAAAAAGCCTTCAAATCCCCAGCATTAGACTTGCAAATGTGTTCCCTTCCCAGGCACGAGATTGCTAACCATTCACGTGTGAAAAATCCACCTGCAATGAAAGAAACCAAGGTTCAATCCCCGGGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGCGGGCTATAGTCCGTGGAGTGGCAAAGGAGTCAAACATGACTGAGCAACTAACACTTTCACTTTTAATTTACAAGCATATGCATCAAGTAGATTGACTTGATATTCTTTGTTGGATTGCCCCTGTGTACTGGAAGTTATGTCATTTATCTGTAAAGGTTATGATCTGCTTTCACCTTTCCCTTATTCTGTTGGGACAGACTGTGTTTTGGTGTCTGGGAGCCTGGACACACCTACACTTTCTCTTTCCTCCCCACCTGTGCTGTCTCTGGTTGCTACCGGTTGTTTGTGGCTTCAGTGTCACTGAGAAGCAAGTCACTGCCTGCTAACGGAAGGAAGTCACTCAGAGCAAAAATAACAGGGTGGAGTTATAAAACTAAACATAGGCGTTTCTGCTCTAAGGCTATATATGCATTCCAGAGGAACTGTATCTTCTGCAAAATCATGCACCAACATTTACAAGGCTTCTGGGAGAAAATAGGACTGGGCTGGACCATTCAAAATCTGTAGGACTTTTCAACATCAACAGAAACAATAAAAAATCCTAATTAAGGAAAGAAAAAATACCAAGATTGATTCTTGTCCCAGAAGAGACTAGAAGTTGGCTCCACACCTAGACAAGCTTTGTCACTAACTCTCCTGCCTCCCATCTGTTCCTCTAAGGGCCCATAGTCTTTCCTAAAAGTCAATCTCTCTCCTCCAAGAGGCCTATGTCTCCCTCTTCCCTTTCCTCTATAAACATGGCATTTAATCCTAAATTCTTTGAATTACTTTTTCCCTGGGTATCTCCCGTGTATACATGAGGTATAAATGTTAGTAAACTTCTCTTTGTTTTCTCATGTTTAAAAAAAAAAAAAAAGCTCAGTTAAATCTCTACCAAATTTGCTTTGTACCCATTTCATGGTCAGCCAGTCATTTGCAACCTTAAATCTGGAATGACGAGCTGGGGGGTGGGAAGAGAGTGGAGATTCACCTCTAATAAAGACCACTTTCATCTCACTTAAAATAGGACCCAAAGCATAGGCTTCTTCATTACTCATTTATCTTAATGTAGTCAGGAAATGACCCACCCACCCCCAGTTTCATTTGTGCCCACAACGTTGCTGGGTATCCTGATATAACCAGATAGCAGAGTGGTTATGAAACCTCTAAACCAGCCACTGCCTGCACTCAGAAAAAGGGAACACATGTATACCTGTGGCGGATTCATTCTGATATTTGGCAAAACTAATACAATTATGTAAAGTTTAAAAATAAAATAAAATTAAAAAAAAAAAAGAAAAAGCACTTTAGGGTCTTCTTAGATTGTTAAGGATTTTTCTTAATTGTGAAAGAGCTTTCTGAGAAGTCTCCCAGATATTAGCATGAGTTAATGATCTAATGATACAACTGAGCGATGCATGAGAAAAGAGAAGATTGTGGGAGACAAGATTAGCTGTTTACAAACATATAAAAGGATGTCTTATAAAAACCAAACCCCCAAAGATCAGACGTTAGCATGTTGTGAGTAATCACATGGGAACAAAGAGGGCTTTTCTAATAATCTGACATAGTGGCGTTCATGATAGCCTGACATCACACCCTATTTGCCAATTGTGTACAGCATGACTGGCCTCCAAGAAACCTACGCTGTAGCAGGGCAGGCTGTATTAAGGCAGTTGTTGTTGCTGTTTAGTCTCTAAGTCATGTCTGACCTCTGTGACCCCACGGACTGTAGCCCGCCAGGCTCCTCTGTCCATGGGATTTCCTAGGCAAGAAGACTGGAGTGAGTAGCTGTTTCCTTCTCCAGGGGATCTTCCTGACCCAGGGATTGAACCTGTGTCTCCTGCATTGCAGGCTGCTGCTTTACTGCTGCGCCATCAGGGAAGCCCATACTGTAGCACTACACCTTTCTAACTTCTATTTTTCAG
Seq C2 exon
CCCCCATTTGTAATGGAGAAGTGGATTGTAGGCATCGTGGAAAATCAGACTGTAGAATGCACTGTCACATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001083:ENSBTAT00000038527:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]