DreINT0177149 @ danRer10
Intron Retention
Gene
ENSDARG00000006978 | zak
Description
sterile alpha motif and leucine zipper containing kinase AZK [Source:ZFIN;Acc:ZDB-GENE-070912-386]
Coordinates
chr9:2893821-2894647:-
Coord C1 exon
chr9:2894531-2894647
Coord A exon
chr9:2893896-2894530
Coord C2 exon
chr9:2893821-2893895
Length
635 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
AAATCTTAATTCCTCTTCAGCCT
3' ss Score
4.04
Exon sequences
Seq C1 exon
GACTGCAAATGGAAAATGTACATGGAGCTGGACGGGGACGAGGTGGCGATAGCGTACATCAAAGACGTGACCTTTAACGCCAACAGACCAGATGTAGATGTTTTAAAGATGACCAAG
Seq A exon
GTGGGAGACCATGAACAGATGCCTCCATTATGTTTTGAGGAACGCAGGAGAACGGACATTGACTCAGTTTGTTTCCTGAGGTCTAATAGCTGGGTGTTTGATCCAGCGACCGTGTACTGTGTTTTGTTTATTTTCCCCCGGTTTATTTATGCTTATGAATTGCATTATGGGCCCTTGATCTTTCTTCCAACAACTTTTAAGCTTGAAAAGTTCACAAAAGTGACGTTTATTGGCATTTTTAAATACTTTAAAGTGATATATTGTCCGGGTTGGTGTTATATATTATGCTACAAAAGCCTTGTAATAAGCTGCAGTGCATTTTCTGTTATTTTACAGACTTATTTCTTTATATATTACAGTATGTCTTATACATTATATTATTTCAAACTACTAAAATGTCAATAAAAGTCACTTTGTTTAACTGTAGAGTTGATTTTTCAACATTAAAATTCAACAGAGCAGAGATCAACATCCTGTAATGCAATTCACAACCGTAAATACGCACTTGTAAATCACAAAATACAGAAACTGTCCATTAATAGAGATTATTTACAGTGTAGTTATAAATGTCATGAATATAAAAATCCTCATGTTGTGTTTTTACTGTGTGTGGTAAAATCTTAATTCCTCTTCAG
Seq C2 exon
CCTCCTTTCGTGATGGATAAATGGATAGTGGGAATATCTGGCACACATACTGTTGACTACATAGTGAACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006978:ENSDART00000102823:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCAAATGGAAAATGTACATGGA
R:
ACTATGTAGTCAACAGTATGTGTGCC
Band lengths:
182-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]