HsaINT0184420 @ hg38
Intron Retention
Gene
ENSG00000091436 | MAP3K20
Description
mitogen-activated protein kinase kinase kinase 20 [Source:HGNC Symbol;Acc:HGNC:17797]
Coordinates
chr2:173258699-173261137:+
Coord C1 exon
chr2:173258699-173258815
Coord A exon
chr2:173258816-173261062
Coord C2 exon
chr2:173261063-173261137
Length
2247 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCCTAACTTTTGTTTTTCAGCCA
3' ss Score
8.1
Exon sequences
Seq C1 exon
GATTGTAAGTGGAAAATGTATATGGAGATGGATGGGGATGAAATTGCAATAACCTACATAAAAGATGTGACATTCAACACTAACCTACCTGATGCGGAGATTTTAAAGATGACAAAG
Seq A exon
GTAGGGTTCTATTTACGGCTTAAAAGCTCTTTTGAATTCACAGATATCAAACAAAGACATTAAAATACCCCAGCAGTGTGCTTTTGTGCTTGTCCATGCTCACATCAGCTCAGCCTCGAGCTGGCTGTTGAAAGGCACATTTTATTTAGCAGACTGAGATCATAATAGGTTTTTGTTAAAATTCTACTTATGCTGTGTGAACTAAAAAGCACTGCAAAAAGGTATCGTTTAATTTTTTTTTAATTTTTTTGTCTATTATTTCTTTATGCTTACTCTGCCATTTATTAAAGGAGGGAAAATGTGAACGATGAAAATATTTACTTCAAATTTTGACTATTTAAACTTTGGAAAACTTTTCCCGGAGAATGACTTTCTTGGTTGAGGTCAATTTCCTGAAGGACTGAGATGAGGTTAATTATGAGGCACACAGTGAAGTCTTAATGGCTTCCTTAAGTTCACACCTATGAATTCCTGGAGTGGCCAGAGAACATGTTACTACTCCAGGGTCAATGGTGGAAGCATGTTGATGGAAGCATGCTGATGAAAACAAGAAAGACTTGTGGAAATGCTTAGCTTGCTCCTCAAAATGGAAAAAAATTCAATTCTGTCCCAATCATACTGGAACAATACATATGAGACTTCAATTGTAGAAGGTCAACAACTTCAGGTAAATAACCATGAAGTCAACAGGATAGTCACCATAACCTCACATAATCCATTAACTGTAATACACTATTCACCAGGTCTTTGGTTTCAGTGAAGAAAGTGGGGCGTGTAGCAAAGGACCCAGATACAAACACAAATAGGGAACTAAAATGGTTCTTCAAAGACATGCATTAGAGTGCACATCAGAGTGCTAAACCACCAAGTCCTTTTAATTTGCAAGTGGACATCAAGCAGATTGATTTGATATTCATTGTTGGATTCCACTGTGCATCTAGGAGTTATTTCCATGGCATTATTTATCTGTAAGGGTTGTCACTTGGTTTTACCTTTTTCTTATTTTGTCAGGACACAGTATGTTGTCTTGAAGACTGGAAAGATATTTCCTTTCTTCCCCACCCATACCACGGAGTTGTAAAACTGAATATAAGTGTTTCTGCTATCATGCCATACATACAAAATCACACAGCAACATTAACAGGCTTATAAGAAAACTAGAACTGGGACAGACCAATCGAAAGTTATAGAATTTTTAAACATCAACCGAAACAATAATAATCCTAATTTAAAACAAACAAACGACAGCAACAACAAAAAACTAGCCCAGGCTGGGTGCAGTGGCTCACACCTGTAATCCCTGCCCTTTGGGAGGCTGAGGTGAGCAGATCACTTGAGGCCAGGAGTTGGAGACCAGCCTAGACAACATGGTGAAACCCCATCTCTACGAAAAATACAAAAAATGAGCCAGGTGTGGTGGCGTGCTCCTGTAATCCCAGCTACTTGAGAGGCTCAGCCTTGAGAATCACTTGAACCCAGGAGGAAGAGGTTGCAGTGAGCCAAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCAGTCTCAAAGAAAACCTAGCCCAGCTAAATCTCTATCACATTTTCTTTGAACCCAGCTCACAGCCAGTCATTCCTTTGCAGCCTTAAACCTGAAGTGAAAGGGGGATGGCAGGAGAGTACAGCTTATTTCTGAGGCTGTTTTTATCATAATTAAAATAGGATCAAAGCTACAGGCTTCCTCACTAATCCTTTGTTTTAATATAGTGGGAAAACATAACCATGGTTTCTTCATGTGTATGTGCAGCTTTGCTGGATAGTGTGATGTCATGGAAAGCAGAGCGATTGTTGAAGCCACTAAACCAGCCACGGCTTTACTCAAGGAAAGCACTTCTGGGTCTTCTCATATTGCTATGGATTTCTCTTAATTGTTGGGAAGTTTTCCAACTGATGCTTCAAACTTTAGCAAGAATTAATGACCTAATGATAGGATTGAGTGATAGCAAATGTTATATCGGAAAAGAAGATTGTGGGAGGCCATGACTAGCTGTTTACAAATATACAAAAGGATGTCTTATGAAAAGCAAAACTTCAAACATTAGCATGTTGTGAGTGATCACATGAGAACCAACAAGGCTTTCATGATAATCTGATATTATGCCCCTATTTGCTAATTGTGTATGGCACAACCGGCCTCAAAGAAACATACTATAGTAGAGCAGACTGTGTTATGGTACTACACCATCCTAACTTTTGTTTTTCAG
Seq C2 exon
CCACCATTTGTAATGGAGAAGTGGATTGTAGGAATAGCAAAAAGTCAGACTGTGGAGTGCACTGTCACATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091436:ENST00000375213:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains