BtaINT0000383 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BAI4]
Coordinates
chr1:137158-137959:-
Coord C1 exon
chr1:137834-137959
Coord A exon
chr1:137265-137833
Coord C2 exon
chr1:137158-137264
Length
569 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CTCACTTTGAACTTTTCAAGGTA
3' ss Score
7.22
Exon sequences
Seq C1 exon
GAAACCTGCGGACCTGCAGAACTTGGCTCCCGGCACCAATCCACCTTTCATGACTTTTGATGGCGAAGTCAAGACAGATGTGAATAAGATCGAGGAGTTCTTAGAGGAGAAATTGGCTCCCCCAAG
Seq A exon
GTGGGCCTCATCAAAACCTTCCCTGTCCACAGACACTTCTAAAGCTCTTGGTGCTGTGTGTTGGTTTTCTGTGGCCATGGCGCTTACCTCCTGAGCTGTACCTGCGATGTGCCACAGGAAACACAGCGAGATTAGAAGCCCTGAGTCTAGGTGGCTGGGAATTCTCTACTCTGCCATTTGGCAATTAGGGTTTGATGGCAGGAAGTGGGCTGATGTCACGTGGGTGGCCCGTTTTGATGGCCCGTTGGGAATGTGTGTTACATGCAACATCGCAGCAGGCTGGGCTTGCAAGGGAGCCTTCTAGTTCATCATCTTTATTTTAGGAGGGAGAGAACCGAGACCAGCAAGGCCAGGGGGCCCTCCATCCCAGGATGAGAACAGTCCATCCAGTGCTTTACTCCTGGCTGGTGTTGCTCCCAACTTTGAAGATGGATAGATTAGGAAAACACTTAAGGAGCAGTTTTCATTTTTATATCTGCTCAAAGAAAGGCATTTCTTCCCCTCCTGCTTTCTATTCTCCTAACTCAAACATTGCTGATCTGTGATACTCTCACTTTGAACTTTTCAAG
Seq C2 exon
GTACCCTAAGCTGGGAACCCAACACCCTGAATCTAACTCTGCTGGAAATGACGTGTTTGCCAAGTTCTCAGCATTTATAAAAAACACCAAGAAGGATGCAAATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001753:ENSBTAT00000002299:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=NA C2=0.270
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100)
A:
NA
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(7.6=18.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTGCGGACCTGCAG
R:
TCTCATTTGCATCCTTCTTGGTGT
Band lengths:
233-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development