RnoINT0037298 @ rn6
Intron Retention
Gene
ENSRNOG00000026870 | Clic6
Description
chloride intracellular channel 6 [Source:RGD Symbol;Acc:727938]
Coordinates
chr11:32687616-32689160:+
Coord C1 exon
chr11:32687616-32687741
Coord A exon
chr11:32687742-32689053
Coord C2 exon
chr11:32689054-32689160
Length
1312 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CCAATTGTGAACTCCTCAAGGTA
3' ss Score
2.86
Exon sequences
Seq C1 exon
GAAGCCTGCAGACCTGCAGAACCTGGCTCCTGGGACCAACCCTCCTTTCATGACTTTTGATGGTGAAGTCAAGACAGATGTGAATAAGATTGAGGAGTTCTTAGAGGAGAAGTTAGTCCCCCCGAG
Seq A exon
GTAAGCCTCCTAGAACTGATACTCACAAGGCCATTGCTGCTATGCCACAGAGACAGCCATGTTAGACACTCTGAGTTAAGATAGACACTGCTTCTGCTCTGGTTTCATTTCTGTTGCTGAGATAGAAACCATCCTGACAAAATAGCAACTTAGGGGAGGGAAGGTCTCTTTGTCTCCCAATTCCAAATTGGGAAGACACTGCAGGGAAGTCAGTGGGGTAGGAATGTAAGCCAACCAGCTATGTCACATTCACAACCAGGAGCAGAGAGAAATGCAGGCTGATATTTGCTATTATCCCTGTGCTGTGTAATTCAGGATCCTCTTCCTAGGGAATGGCACCACCCACAGTGGACTGGATCTACTATTATCCCTGTCCTGTGTAGTTCAGGACTCTCTTCCTAGGCAATGGTACCACCCACAGTGGACTGGATCTACTATTATCCCTGTCCTGTGTAGTTCAGGACCCTCTTCCTAGGGAATGGTACCACCCACAGTAGACTGACTGAATCTACTATTATCCCTGTCCTGTGTAGTTCAGGACCCTCTTCCTAGGGAATGGCACCACCCACAGTGGACTGGATCTACTATTATCCCTGTCCTGTGTAGTTCAGGACTCTCTTCCTAGGCAATGGCACCATCCACAGTGGACTGGATCTACTATTATCTCTGTCCTGTGTAGTTCAGGACCCTCTTCCTAGGAAATGGTATCACCCACAGTGGACTGGATCTACTATTATCCCTGTCCTGTGTAGTTCAGGACCCTCTTCCTAGGGAATGGCACACCCAGGGTGGACTGGATCTTTCCATATCAATTAATAATCAAGCCATTCCCACAGACCAGTCTGATCTAGACAGTTCCTCAGTTAAGACTCTTCTCTCAGGTGATTCTAGGTTGTGGCAGTTTGACACTCAAAACCAACCATAACAGCTTCCTTTCTTTGTATCCATAGCTTGGTGGTCAGAATGGTATGGCAGAAGGGACAGAGGAAGTGTCATTGCTGTGTGTGATAACTGTCTCTCATGTCTGCTACTGGAAGAAGCTTCAGGAACCTTCTAGTCAAACACCTTCATTAGATGGGGGAGAGGATTAGGTCAGGAACATCCCGTTGTCCCTAGGATTGGTCTTGCCGGGACCAGATCCAACGCAGTTCTCTCAAATCATTTTTACTCAGCCTTGAGATGCATTGATCACTAATCCAGTCTACAGGAGTTTGTCCTTTTAATATCATCCCAGAGAAAGGCCTTTTCCTCTACTTCATCATCCCGACTAGCCATTGCTTATTTGTGACCCTCCAATTGTGAACTCCTCAAG
Seq C2 exon
GTACCCTAAGCTGGGAACCCAACACCCCGAATCCAACTCAGCGGGAAATGACGTTTTTGCCAAATTCTCAGCGTTTATTAAGAACACCAAGAAGGATGCAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026870:ENSRNOT00000034383:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.504 A=NA C2=0.243
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100)
A:
NA
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(11.1=24.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGCAGAACCTGGCTC
R:
TGTCATTTGCATCCTTCTTGGTGT
Band lengths:
224-1536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]