BtaINT0000483 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33621276-33622927:-
Coord C1 exon
chr19:33622883-33622927
Coord A exon
chr19:33621480-33622882
Coord C2 exon
chr19:33621276-33621479
Length
1403 bp
Sequences
Splice sites
5' ss Seq
AAAATCAGT
5' ss Score
-6.2
3' ss Seq
CTTCCCCGGTTTCCCTCTAGAAG
3' ss Score
10.4
Exon sequences
Seq C1 exon
CGAGCATGCACATGCTCACTGGTGAGGTGAGAAACAAGGATGAAA
Seq A exon
ATCAGTCAGTGTGATCCTAAGTCTCCCTCTGCACCAGGTTGTATCCCTTGGTCTAGCCCCCCGACCTCTGGTACAGGGAAGGGGAGGGGCACCTCCAGGATCCAACCCACCAGGAGCTATTTTTGCAGCACTGGATTCAGTCTTTATTTATTTGTTTGGCTCTGTGAGGTCTTAGTTGTGGCATGTGGGATCTTTAGTTGTGGCATGTGGGATCTTTAGTTGTGGCATGAGGGACCTAGTTCCCTGACCAGGGATTGAACCCAGACTCCTGGACTGGGAGTGCGATCTTAACCACTGGGCCACCAGGGCTGTCCCTGGATTCAGTCTTGAGGTGGAAATAAGAGCAGTGGGGAATTGGGCTCTGACCTTAAGCCTGTCCTCAGTTGGTTTTTGAATCAAGACACATACATGGAAATATAGGAAACACAAAGCATAGATTCTAAAATGCTTTTTATATGGAAAATTTGAAGTTTCAAAAAATAGGTTTGTTTTTGTTGTTCAGTTACTAAGTCGTGTCTGATTCTTTGTGTCCTCATGGACTGCAGCATGCCAGGCTCCTTCCTCTCTCCTCTCCTGTTCCTGGAGCTTGCTCAAACTCCTATCCATCAAGTCGATGATGCCATCCAACCATCTCATCCTCTGTTTCTCCCTTCTCCTCCTGCCTTCCATCTTTCCTGGCATCAGGGTCTGTTCCAAGGAGGTAGAACAGTGTAATCGTCACCCGTGTAACTGTCTTCCAGGCTCAATAATCGTCACCATCTTGTCCATCTCATTTCATCCACCCCTCTCTTTTGAAATTGTCTGAGACCTTTTCTTGTTGGGATCCTTTAAAGGGAACTCTGGACACCATGCCTTTTCACCAGCAGGGCAGTTTTCATCCTGCAGGTGTCACCTTGAGCTGGGAATGCTGAAAACTGCTTGTATGCTTGGTTAGGGGAAATTGTATTTGCACTTTGGCAGAAGAAATGACCAAAGCTCAGTGGCCTCAGGGTAGACTCTGATGAGCTCTGTTTTGGTGGGGGAGCTTTTGGCAAGGACTTGCTCTGGGCCTGGTGGTGGTGGTAGTTTAGTTGCCAAGTCACGTCTGACTTTTTTGCAGCCCTGCATAGAGTCGGACCTTATTGAACGACCAAGCACATACACACATGAGCTGTAGCCCACCAGACTCCTCTGTCCATTGGATTTCCCAGGCAAGAATACCGGAGTGGGTTGACATTTTCTTCTCCAGGGGATCTTCCTGGCCAAGGGACTGAACATGGATCTCCTGCATTGCAGGCAGATTCTTTACTGGCTGAGCCAGCAGGGAAGCCCAAAAGTGCTCAGAGAAAGCACATGTCCCTGGGTGGGCTTGGACTCATTCCAAAGATGCCCCAGTTGTGCCCCCTTCCCCGGTTTCCCTCTAG
Seq C2 exon
AAGTACAGTGGAAGAGTTCGCTCCAGTGTATTTCCGAGATGAACAGGCTATTTTCTGAAAAAGCCAGTGTGTCCAAATCAGGCTTGGCCCCGGCCACTGATGTGCTGTTGGAGCTGGACACTGTCAGAGAACTGTCCTCTGGGGTCAGCAGGTACCGCGACTTCATCCGCCAGCTGCCCATCCACCTCTCCAAGTATATTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605:ENSBTAT00000003367:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(33.3=21.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCACATGCTCACTGGTGA
R:
ATACTTGGAGAGGTGGATGGGC
Band lengths:
238-1641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]