MmuINT0063426 @ mm10
Intron Retention
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62850572-62853155:+
Coord C1 exon
chr11:62850572-62850742
Coord A exon
chr11:62850743-62852954
Coord C2 exon
chr11:62852955-62853155
Length
2212 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TTTCTCTGGCTTTGCTCTAGAGG
3' ss Score
8.08
Exon sequences
Seq C1 exon
GCCTTCATGATGACACTCCTGATGTGATGTTCTTCCCTGAGAAAAAGTACAGCGGTACACAGGACACCTCATATGTCTCTTGGGCAGCTAGACCCAAACCTGTGTCATTCCCAATGTCCAAACATTTAGGTAATAAACTCGGGACTGAAAATGTGGACAGAGAAACAACCG
Seq A exon
GTAAGTCAGGCTCTATGAAGACATCTGACATCGCATTAGGGGAGTTAGGTGGCTCACCCTACAGCTTAAAAAAAAAAAAGAAAAGCTTTTGTTGGGTCTTTTGTGACTTGATGGCATCCTACATCAATAGTTTGACTTAAGATTTTTTTTTCTCTTTTGGATGGTTATGGGGTAGCAAAACCATTTTTTGAGTCAGTCTTAGTATGTATCCTAGCTGGCCTTGAACTCACGATGCTCTTAGACTCACCCTCCATCACAATCATGGGCACGGACTATTTATGATGACCTTTCCAGGACCTGACCTCGTATGACGTCAAAGAGCTTCTCTAGATGAACTTGGAAACTCTCAGTGGTGTTGGAGGCACAAGCAAGGCCAGAGAAGCCAGGGACATCAAATGTTAGAAACTAACCTTCATTTAACAATAGGCATTGGGCTCTTTTTTTTTTTCCTCATTTAATCCTCACGGCTGGTAAGAGAAGAAGGATAAAAACTGGTCAGTATTACCACTAATGTTCTTGCTTTCACCACCATGGTGTCTCTAAGATACTATTGAAATAGAGATCAGAAAGGAATTTTCTAGAGCTTCCTTGATTTCTTTTCCTCCTCTAGCCTAGGCTAGTGTGCCCTCTCTTTCCTGGGCTCTGGCTTGGTACATGGTGGCCCTCTAGAGTCCAGTTCAGTTATTGTTTTTGAAGCCCTGGATCCAGTTTTGTGGGGAAAGTAATGTAGTGAATGAATGAATGAAGAAAGAAAGAAAGATAGAAAGAAAAGAAAAGAAAACTGGAAGGACATGACTGCCCCTAGGTATGGAGGAGGGGAAAGGTTTTTGTTGACAAGAGGGAGAGCAGAGTCAGGCAGAGACATTTAGGAAAGTCCAAGTGAACATGACCTGAGATGGACTATGTGAGGAGAAGGGAGAGGAGGGAAGAGAAAACCAGGGGAGGCTTGGGCCAAGAGACTGCGATAGCCAAAATGGCTGTTATAGGGGCCAGAGAAGTTGGAGTGGGAAAAGCCTAGCTCAATACCTGGGCTGGAGAGTTCAGGTATGACAGCCAGGAGGGCCCTGTAACAGGTAGACTGAGGGATGCTGGGAGAAGCCGGTGGCCAGCGTCTGCTTTGATAATTAGTGGACACCTCAGTGAGCCCTTTGTCCCAGGTTTGAGACCTAACAGTGAAGACTGTGATTCCAGACCTGAAGACCTTCCCAAGTTGATCTTTGAAGCCGGGCAAACGTGGTCACTCATGTGGACACTAGTCCAAGTTGGCCCGGAATTTGCTATCCAGCTGACTCTGGGTTTGAACTTGTAGTTCTCGCCTGAGCCTCTCAAGTGGTGGAGGTACAGGTGTGCAGCACCACACCCAGTTAGGGATGTGCTGTGTGAAAGGCATTGCCAGTTGACTCTGTCATGTGTGAACCTCGTAAAGTCTGCTTACAGAAACCTGGACAGCACAGCCTACTATATACCCAGGCTAGGTCATACATGCCATCCGTCATGGTGTGGCACACTGTGTCATTCGTGACAGCCCATGAAATAAGCATGAGAAATACAAAATACCTTGTAAATAAAGGCTTCCAATTGTAAAGGTACACAGAACAGCATACTATCTAGTCACACGCCCATCCTGTAGCTTCAGCAATGGTCGATGTTTTAGCAGTCTTAGTATTTTTATGATGCTGGTGACTGAACCTAGGATCTCATACTTGCTAGTAAATGCTTTGCCTGTGAGCCAAACCTCTAACCTGGCAATTTTAATTCATTCTACTTCCTGATTCTTAAATTGCTTCAATTTTTTTCACTAAAGCATTGTGAGTGTGTGTGTGTGCCCCTCCCCAGTGCTGGAATTGCAGATGGGTACCATTGCACCTGGCTTTTAAGTTGATGTTTGGGATCAATACCCAGGTCTTTATGTTTGTACAGCAAGCACTTTATGGACCCAGCTCTCTCCCCAGTCCTCACCGGCACATTTTACAGGAAATTCAGGAGAAGATGCCATCTCAGTCTTTGCTGCTATAAATATCTTGAGCTGAAAAGCAACTGTACATTTGAATCAGGAGATTCGACTTCAGGTGGGAGAGAGGCTGATTAGAATATTCAGCGGCCTAGGGGTAGACGTGGAGATCTATTTGGGGGCAAGCTTTGCAGTGGATTTGTTCGGGGGACTAGACTTACTACAGACTCAACCATCTACCTTTCTCTGGCTTTGCTCTAG
Seq C2 exon
AGGGAAAAGGGGAGAGTTCGCTCCAGTGTATCCATGAAATGAATAGACAGATTTTTGGAAAAGGGGGCATGTCCAGGCTGGGAGATGATCCGTGCAACCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGTCTTCTGGGTACAGCAAATATCGGGACTTTATACGCGACCTGCCTCTCCACCTCTCCAAGTACATTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173:ENSMUST00000176577:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types