MmuEX1010279 @ mm10
Exon Skipping
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62850572-62853392:+
Coord C1 exon
chr11:62850572-62850742
Coord A exon
chr11:62852955-62853155
Coord C2 exon
chr11:62853265-62853392
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGGCTTTGCTCTAGAGG
3' ss Score
8.08
5' ss Seq
TAAGTATGC
5' ss Score
2.72
Exon sequences
Seq C1 exon
GCCTTCATGATGACACTCCTGATGTGATGTTCTTCCCTGAGAAAAAGTACAGCGGTACACAGGACACCTCATATGTCTCTTGGGCAGCTAGACCCAAACCTGTGTCATTCCCAATGTCCAAACATTTAGGTAATAAACTCGGGACTGAAAATGTGGACAGAGAAACAACCG
Seq A exon
AGGGAAAAGGGGAGAGTTCGCTCCAGTGTATCCATGAAATGAATAGACAGATTTTTGGAAAAGGGGGCATGTCCAGGCTGGGAGATGATCCGTGCAACCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGTCTTCTGGGTACAGCAAATATCGGGACTTTATACGCGACCTGCCTCTCCACCTCTCCAAGTACATTCTAA
Seq C2 exon
GAATGCTGGATAAGCACAGTCTGAACAGGTGTATCTTTGTAAGCCAGCACTGGGCCACTCTGGCCCAGCAGGTCAAGGTGGACCAGTCCATGCACTCCTTCATTCAGAACCAGATTTCTCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173-'2-3,'2-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCATGATGACACTCCTGA
R:
TGCAGGAGAGAAATCTGGTTCTG
Band lengths:
298-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types