RnoEX6047692 @ rn6
Exon Skipping
Gene
ENSRNOG00000003287 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr10:49263160-49264676:+
Coord C1 exon
chr10:49263160-49263330
Coord A exon
chr10:49264247-49264447
Coord C2 exon
chr10:49264549-49264676
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGGCTTTGCTCTAGAGG
3' ss Score
8.08
5' ss Seq
TAAGTATGC
5' ss Score
2.72
Exon sequences
Seq C1 exon
GCCTCCGTGAAGACGCCTCCAATGTGATATTCTTCCCCGAGAAAACCTACAACGCTACACATGACATCTCGTATATCTCTTGGTCAGCTAGACCCAAACCCGTGTCATTCCCAATGTCCAGACATTTAGGTAATAAACTTGGGACTGAAAATGTGGACAAAGGAACAACTG
Seq A exon
AGGCAAAAGCGAAGAGCTCGCTCCACGTTATCTCCGAGATAAATAAGGAGATTTTTGGAAGAGGGGGCACGTCCAGGCTGGGAGATGAGCCGTGCAACCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGTCTTCTGGGTTCAGCAAATACCGGGACTTTATACGTGACCTGCCTCTCCACCTCTCCAAGTACATTCTAA
Seq C2 exon
GGATGCTGGATAAGAACAGCCTGAACAAGTGTGTCTTTGTCAGCCAGCACTGGGCCACCCTGGTCCAGCAGGTCAAGGTGGACCAGTCCATGCACTCCTTCATTCAGAACCAGATCACTCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003287-'2-5,'2-3,5-5=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGACGCCTCCAATGTGA
R:
TGCAGGAGAGTGATCTGGTTCT
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]