GgaEX7009433 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NMG9]
Coordinates
chr18:2210821-2211805:+
Coord C1 exon
chr18:2210821-2211004
Coord A exon
chr18:2211372-2211578
Coord C2 exon
chr18:2211678-2211805
Length
207 bp
Sequences
Splice sites
3' ss Seq
GCCCGTCCAATGTCTTCTAGGTG
3' ss Score
10.24
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATGCTCACAGCACCGGGCCGGCGCGTCCCGGTTCCCCGGCAGCGCGGGGCGGTGTCCCGGCAGCGCGGGGCGGGGCGGCCCCGGATGGCGGCGGTGCGGGGCTGCGGGTCCGGTCCGCGCCTCGGCGCTGAGCGGGGCCGGGGGGCAGCGGGGTCGGGCAGCACCGAACCCTTCCTTCGGACAG
Seq A exon
GTGGGCAAGCACCAGCACTGCGCTTCTGTCCCCCAGCCACCAGCAGCCCCATCCCAGAGGGTCCTGGTGCAGAGGTTGCCTCATCTACTGCGTCCTCAGCCCATGCAGATGTCCATCCACCTCCCACATCTCTCCCATCGCTTTCTCGTGTCACATACAAGGACTTCATTCGCTGCCTGCCGGTTCACCTCTCCCAGTATATCCTGG
Seq C2 exon
GGCTTTTGGATAACAAATCCCTTAAAACATGTGCCAACGTGAGTAGGTACTGGGCTTTTCTGGCCAAAGAAGTTGAGAAGGAGCATGTGTGTCAAAAAGCAGTACAGAAGAAAATCCTGTATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001323-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF129372=F-box-like=PU(32.5=18.6)
C2:
PF129372=F-box-like=PD(65.0=60.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCACCGAACCCTTC
R:
CTGCAAATACAGGATTTTCTTCTGT
Band lengths:
156-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]