MmuINT0063426 @ mm9
Intron Retention
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62664074-62666657:+
Coord C1 exon
chr11:62664074-62664244
Coord A exon
chr11:62664245-62666456
Coord C2 exon
chr11:62666457-62666657
Length
2212 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TTTCTCTGGCTTTGCTCTAGAGG
3' ss Score
8.08
Exon sequences
Seq C1 exon
GCCTTCATGATGACACTCCTGATGTGATGTTCTTCCCTGAGAAAAAGTACAGCGGTACACAGGACACCTCATATGTCTCTTGGGCAGCTAGACCCAAACCTGTGTCATTCCCAATGTCCAAACATTTAGGTAATAAACTCGGGACTGAAAATGTGGACAGAGAAACAACCG
Seq A exon
GTAAGTCAGGCTCTATGAAGACATCTGACATCGCATTAGGGGAGTTAGGTGGCTCACCCTACAGCTTAAAAAAAAAAAAGAAAAGCTTTTGTTGGGTCTTTTGTGACTTGATGGCATCCTACATCAATAGTTTGACTTAAGATTTTTTTTTCTCTTTTGGATGGTTATGGGGTAGCAAAACCATTTTTTGAGTCAGTCTTAGTATGTATCCTAGCTGGCCTTGAACTCACGATGCTCTTAGACTCACCCTCCATCACAATCATGGGCACGGACTATTTATGATGACCTTTCCAGGACCTGACCTCGTATGACGTCAAAGAGCTTCTCTAGATGAACTTGGAAACTCTCAGTGGTGTTGGAGGCACAAGCAAGGCCAGAGAAGCCAGGGACATCAAATGTTAGAAACTAACCTTCATTTAACAATAGGCATTGGGCTCTTTTTTTTTTTCCTCATTTAATCCTCACGGCTGGTAAGAGAAGAAGGATAAAAACTGGTCAGTATTACCACTAATGTTCTTGCTTTCACCACCATGGTGTCTCTAAGATACTATTGAAATAGAGATCAGAAAGGAATTTTCTAGAGCTTCCTTGATTTCTTTTCCTCCTCTAGCCTAGGCTAGTGTGCCCTCTCTTTCCTGGGCTCTGGCTTGGTACATGGTGGCCCTCTAGAGTCCAGTTCAGTTATTGTTTTTGAAGCCCTGGATCCAGTTTTGTGGGGAAAGTAATGTAGTGAATGAATGAATGAAGAAAGAAAGAAAGATAGAAAGAAAAGAAAAGAAAACTGGAAGGACATGACTGCCCCTAGGTATGGAGGAGGGGAAAGGTTTTTGTTGACAAGAGGGAGAGCAGAGTCAGGCAGAGACATTTAGGAAAGTCCAAGTGAACATGACCTGAGATGGACTATGTGAGGAGAAGGGAGAGGAGGGAAGAGAAAACCAGGGGAGGCTTGGGCCAAGAGACTGCGATAGCCAAAATGGCTGTTATAGGGGCCAGAGAAGTTGGAGTGGGAAAAGCCTAGCTCAATACCTGGGCTGGAGAGTTCAGGTATGACAGCCAGGAGGGCCCTGTAACAGGTAGACTGAGGGATGCTGGGAGAAGCCGGTGGCCAGCGTCTGCTTTGATAATTAGTGGACACCTCAGTGAGCCCTTTGTCCCAGGTTTGAGACCTAACAGTGAAGACTGTGATTCCAGACCTGAAGACCTTCCCAAGTTGATCTTTGAAGCCGGGCAAACGTGGTCACTCATGTGGACACTAGTCCAAGTTGGCCCGGAATTTGCTATCCAGCTGACTCTGGGTTTGAACTTGTAGTTCTCGCCTGAGCCTCTCAAGTGGTGGAGGTACAGGTGTGCAGCACCACACCCAGTTAGGGATGTGCTGTGTGAAAGGCATTGCCAGTTGACTCTGTCATGTGTGAACCTCGTAAAGTCTGCTTACAGAAACCTGGACAGCACAGCCTACTATATACCCAGGCTAGGTCATACATGCCATCCGTCATGGTGTGGCACACTGTGTCATTCGTGACAGCCCATGAAATAAGCATGAGAAATACAAAATACCTTGTAAATAAAGGCTTCCAATTGTAAAGGTACACAGAACAGCATACTATCTAGTCACACGCCCATCCTGTAGCTTCAGCAATGGTCGATGTTTTAGCAGTCTTAGTATTTTTATGATGCTGGTGACTGAACCTAGGATCTCATACTTGCTAGTAAATGCTTTGCCTGTGAGCCAAACCTCTAACCTGGCAATTTTAATTCATTCTACTTCCTGATTCTTAAATTGCTTCAATTTTTTTCACTAAAGCATTGTGAGTGTGTGTGTGTGCCCCTCCCCAGTGCTGGAATTGCAGATGGGTACCATTGCACCTGGCTTTTAAGTTGATGTTTGGGATCAATACCCAGGTCTTTATGTTTGTACAGCAAGCACTTTATGGACCCAGCTCTCTCCCCAGTCCTCACCGGCACATTTTACAGGAAATTCAGGAGAAGATGCCATCTCAGTCTTTGCTGCTATAAATATCTTGAGCTGAAAAGCAACTGTACATTTGAATCAGGAGATTCGACTTCAGGTGGGAGAGAGGCTGATTAGAATATTCAGCGGCCTAGGGGTAGACGTGGAGATCTATTTGGGGGCAAGCTTTGCAGTGGATTTGTTCGGGGGACTAGACTTACTACAGACTCAACCATCTACCTTTCTCTGGCTTTGCTCTAG
Seq C2 exon
AGGGAAAAGGGGAGAGTTCGCTCCAGTGTATCCATGAAATGAATAGACAGATTTTTGGAAAAGGGGGCATGTCCAGGCTGGGAGATGATCCGTGCAACCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGTCTTCTGGGTACAGCAAATATCGGGACTTTATACGCGACCTGCCTCTCCACCTCTCCAAGTACATTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173-Fbxw10:NM_001033669:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(33.3=22.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: