RnoINT0060050 @ rn6
Intron Retention
Gene
ENSRNOG00000003287 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr10:49263160-49264447:+
Coord C1 exon
chr10:49263160-49263330
Coord A exon
chr10:49263331-49264246
Coord C2 exon
chr10:49264247-49264447
Length
916 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTTCTCTGGCTTTGCTCTAGAGG
3' ss Score
8.08
Exon sequences
Seq C1 exon
GCCTCCGTGAAGACGCCTCCAATGTGATATTCTTCCCCGAGAAAACCTACAACGCTACACATGACATCTCGTATATCTCTTGGTCAGCTAGACCCAAACCCGTGTCATTCCCAATGTCCAGACATTTAGGTAATAAACTTGGGACTGAAAATGTGGACAAAGGAACAACTG
Seq A exon
GTAAGTCAGGCTGTGTGAAGACATCTGACACACCATTGTGGGAATTTGGCTTACCCTACAGTTTTAAAAAAAGAAAGACTATTGTTGGGTCTTTTGTGACTTGATGACATCCTACACCAATAGTTTGACTTAAGGTTTTTTTTAAAAATTTTTTTGTATGGTTATGGGGTAGTAAAAACATTTTGTTGTTGCTTTTTTGGGTCAGTCTTAGTATGTATCCCAGCTGGCCTTGAACTCAGGTGCTCCTAGATTTGCCCTCCTATCACAATCACAGGCATGAGTTACTGTGTCATTATTTTTACTTTTGATGACCTTTTCAGGACCTGACCTCGTATGAAGTCAAAGAGCTTCTCTAGATGAACTTGGAAACTCTCAATGGAGTTGGAGGCACTGGCAAGGCCAGAGAAGCCAGGGACATCAAATGTTAGAAACTAACCTTCATTTAACAGTAGGCGTTGGGCTCTTGGGATTTTTTTCCCCTCATTTAATCCTTACACCTGGTAAGAGAAGAAGGATAAAAACTTGTCAGTATTACCATTAATGTTCTTGCCTTCACCTCCATGGTGTCTCTGAGATATTCCTAGAAATAGAGATCAGAAAGGAACTTTCTAGAGCTTCCTTGATTTTTTTTTCTCCCTCTGTCCTGGGCCAGTGTGTCCTCTGTCTCCTGAGCTCTGACTTGGTACATGGTGGCCCTCTAGAGTTCGACCCAGTTATTGTTTTTGAATCACTGGATCAGAGCTCCTGTACGTTTGAAACAGGAGGTTCTTCTTCCTGTGGGAGAGAGATAGAATATTCAGTGGCCTAGGGGTAGATGTGGAGATTTATTTTGGGGGAAGCTTTGCTGCGGTGGATTTGTTCGGGGACTAGAGTTACTACAGACTCAACCATCTACCTTTCTCTGGCTTTGCTCTAG
Seq C2 exon
AGGCAAAAGCGAAGAGCTCGCTCCACGTTATCTCCGAGATAAATAAGGAGATTTTTGGAAGAGGGGGCACGTCCAGGCTGGGAGATGAGCCGTGCAACCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGTCTTCTGGGTTCAGCAAATACCGGGACTTTATACGTGACCTGCCTCTCCACCTCTCCAAGTACATTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003287:ENSRNOT00000091100:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGACGCCTCCAATGTGA
R:
TACTTGGAGAGGTGGAGAGGC
Band lengths:
358-1274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]