BtaINT0000484 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33621054-33621479:-
Coord C1 exon
chr19:33621276-33621479
Coord A exon
chr19:33621182-33621275
Coord C2 exon
chr19:33621054-33621181
Length
94 bp
Sequences
Splice sites
5' ss Seq
TAAGTATGT
5' ss Score
4.58
3' ss Seq
CCCACCTCTTGTTCTTCCAGGTT
3' ss Score
11.68
Exon sequences
Seq C1 exon
AAGTACAGTGGAAGAGTTCGCTCCAGTGTATTTCCGAGATGAACAGGCTATTTTCTGAAAAAGCCAGTGTGTCCAAATCAGGCTTGGCCCCGGCCACTGATGTGCTGTTGGAGCTGGACACTGTCAGAGAACTGTCCTCTGGGGTCAGCAGGTACCGCGACTTCATCCGCCAGCTGCCCATCCACCTCTCCAAGTATATTCTAA
Seq A exon
GTATGTGGGGCCTGTTGTGGGGTTTCTCAAGCACCCCCTCTCCCTCCTCGTGGCCCAGGTGGGAGGTTCCCAGGCCCACCTCTTGTTCTTCCAG
Seq C2 exon
GTTTGCTGGATAGGAGCACCTTGAACAGGTGTAGCTTTGTGAGCCAGCACTGGGCGGCGCTGGCACAGCAGGTCAAGGCCGACCTGTCCATGCACTCCTTCATCCAGCACCAGATCACCTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605:ENSBTAT00000003367:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064628=F-box=PU(33.3=21.7)
A:
NA
C2:
PF0064628=F-box=PD(64.4=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAACTGTCCTCTGGGGT
R:
GAAGGAGTGCATGGACAGGTC
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]